View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9841_low_7 (Length: 280)
Name: NF9841_low_7
Description: NF9841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9841_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 5e-99; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 9 - 270
Target Start/End: Complemental strand, 47573473 - 47573212
Alignment:
| Q |
9 |
cttttatgcttttttcttcatttttctatattccattctatcaaggaagtggttataatgtttagtgtcgttgaaggctataagacaacgtattcttttc |
108 |
Q |
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| T |
47573473 |
cttttatgcttttttcttcatttttctatattccattctatcaaggaagtggttataatgtttagtgttgttgaaggctataagacaacgtattcttttc |
47573374 |
T |
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| Q |
109 |
caacttgactaatcaggannnnnnncaggaccaaaatcatgtatccccttctcttgggcctcccattgaaacataacatcttgccannnnnnnnnnnnnn |
208 |
Q |
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| T |
47573373 |
caacttgactaatcaggatttttttcaggaccaaaatcatgtatccccttctcttgggcctcccattgaaacataacatcttgccattttttcttttctt |
47573274 |
T |
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| Q |
209 |
nnnnaaagctaaaccctctcctagttcttaaaatattgatgaactacttatattttcctttg |
270 |
Q |
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| T |
47573273 |
ttttaaagctaaaccctctcctagttcttaaaatattgatgaactacttatattttcctttg |
47573212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 47566361 - 47566305
Alignment:
| Q |
20 |
ttttcttcatttttctatattccattctatcaaggaagtggttataatgtttagtgt |
76 |
Q |
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| T |
47566361 |
ttttcctcgtttttctatattccattctatcaaggaagtggttagaatgtatagtgt |
47566305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 26 - 86
Target Start/End: Complemental strand, 47571040 - 47570980
Alignment:
| Q |
26 |
tcatttttctatattccattctatcaaggaagtggttataatgtttagtgtcgttgaaggc |
86 |
Q |
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| T |
47571040 |
tcatttttctgtattccattctatcaaggaaatggttagaatgtatagtgttgctgaaggc |
47570980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 265
Target Start/End: Complemental strand, 47582713 - 47582660
Alignment:
| Q |
213 |
aaagctaa-accctctcctagttcttaaaatattgatgaactacttatattttc |
265 |
Q |
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|||||||| ||||||||||| || |||||||||||||||||| |||||||||| |
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| T |
47582713 |
aaagctaacaccctctcctaattgataaaatattgatgaactaattatattttc |
47582660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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