View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9841_low_8 (Length: 242)

Name: NF9841_low_8
Description: NF9841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9841_low_8
NF9841_low_8
[»] chr3 (2 HSPs)
chr3 (19-239)||(41470319-41470539)
chr3 (117-208)||(29704511-29704602)
[»] chr8 (4 HSPs)
chr8 (33-239)||(11107829-11108035)
chr8 (33-108)||(11594111-11594186)
chr8 (117-197)||(39533563-39533643)
chr8 (192-239)||(11594058-11594105)
[»] chr1 (1 HSPs)
chr1 (117-196)||(28214411-28214490)
[»] chr6 (2 HSPs)
chr6 (108-196)||(18748455-18748543)
chr6 (140-237)||(30147905-30148002)
[»] chr4 (1 HSPs)
chr4 (108-155)||(26622507-26622554)


Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 41470319 - 41470539
Alignment:
Q  19 acgaagatggctgctttgttcgtgcaaaaacaatgtggcacacaccgttatgttcagttgatattggagaagcattggggctgcatcacgctatccattg 118  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||    
T  41470319 acgaagatggatgctttgttcgtgcaaaaacaatgtggcacacaccgttatgttcagttgatattggagaagcattggggctgcatcacactatccgttg 41470418  T
Q  119 ggttcatgagctacaactccaaaatgtggatttcgaggttgattcgaagcgtgtagcggactattttaaccgaggcaatggtgatatcacaaaatttggg 218  Q
    |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  41470419 ggttcatgagctacaactccaaaatgtgaattttgaggttgattcgaagcgtgtagcggactattttaaccgaggcaatggtgatatcacaaaatttgag 41470518  T
Q  219 gtcattatggatagcaatagg 239  Q
    |||||||||||||| ||||||    
T  41470519 gtcattatggatagtaatagg 41470539  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 117 - 208
Target Start/End: Original strand, 29704511 - 29704602
Alignment:
Q  117 tgggttcatgagctacaactccaaaatgtggatttcgaggttgattcgaagcgtgtagcggactattttaaccgaggcaatggtgatatcac 208  Q
    |||||||||||||||  ||| |||||||| ||||| |||||||||||||| |||||||| || ||||||||||||  |||| | ||||||||    
T  29704511 tgggttcatgagctaagacttcaaaatgttgattttgaggttgattcgaaacgtgtagcagattattttaaccgaatcaatagagatatcac 29704602  T

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Target: chr8 (Bit Score: 111; Significance: 4e-56; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 33 - 239
Target Start/End: Complemental strand, 11108035 - 11107829
Alignment:
Q  33 tttgttcgtgcaaaaacaatgtggcacacaccgttatgttcagttgatattggagaagcattggggctgcatcacgctatccattgggttcatgagctac 132  Q
    ||||||||||||||||||||||| ||||| ||||  ||| ||||||||||||||||||| |||| ||| ||||||||||| | ||||||||||||| |||    
T  11108035 tttgttcgtgcaaaaacaatgtgacacacgccgtagtgtgcagttgatattggagaagctttggtgctacatcacgctattcgttgggttcatgagttac 11107936  T
Q  133 aactccaaaatgtggatttcgaggttgattcgaagcgtgtagcggactattttaaccgaggcaatggtgatatcacaaaatttggggtcattatggatag 232  Q
    | || |||||||| ||||| ||||| ||||||||||| ||||| |||||||| |||| ||||||||||||| ||||| |||||||| |||||||||||||    
T  11107935 agcttcaaaatgttgattttgaggtagattcgaagcgcgtagctgactatttcaaccaaggcaatggtgatgtcacagaatttgggatcattatggatag 11107836  T
Q  233 caatagg 239  Q
     ||||||    
T  11107835 taatagg 11107829  T

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Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 33 - 108
Target Start/End: Complemental strand, 11594186 - 11594111
Alignment:
Q  33 tttgttcgtgcaaaaacaatgtggcacacaccgttatgttcagttgatattggagaagcattggggctgcatcacg 108  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||| |||||||    
T  11594186 tttgttcgtgcaaaaacaatgtggcacaaaccgttatgttcggttgatattggagaagctttggggctacatcacg 11594111  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 117 - 197
Target Start/End: Original strand, 39533563 - 39533643
Alignment:
Q  117 tgggttcatgagctacaactccaaaatgtggatttcgaggttgattcgaagcgtgtagcggactattttaaccgaggcaat 197  Q
    |||||||||||||||  ||| |||||||| ||||| |||||||||||||| ||||||||  | |||||||||||| |||||    
T  39533563 tgggttcatgagctaagacttcaaaatgttgattttgaggttgattcgaaacgtgtagcaaattattttaaccgaagcaat 39533643  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 239
Target Start/End: Complemental strand, 11594105 - 11594058
Alignment:
Q  192 ggcaatggtgatatcacaaaatttggggtcattatggatagcaatagg 239  Q
    |||||||||||||||||| |||||||| ||| ||||||||| ||||||    
T  11594105 ggcaatggtgatatcacagaatttgggatcaatatggatagtaatagg 11594058  T

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Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 117 - 196
Target Start/End: Complemental strand, 28214490 - 28214411
Alignment:
Q  117 tgggttcatgagctacaactccaaaatgtggatttcgaggttgattcgaagcgtgtagcggactattttaaccgaggcaa 196  Q
    |||||||||||||||  ||| |||||||| ||||| |||||||||||||| |||||||| || |||||||||||| ||||    
T  28214490 tgggttcatgagctaagacttcaaaatgttgattttgaggttgattcgaaacgtgtagcagattattttaaccgaagcaa 28214411  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 108 - 196
Target Start/End: Original strand, 18748455 - 18748543
Alignment:
Q  108 gctatccattgggttcatgagctacaactccaaaatgtggatttcgaggttgattcgaagcgtgtagcggactattttaaccgaggcaa 196  Q
    ||||| || ||||||||||| |||  ||| |||||||| ||||| |||||||||||||| |||||||| || |||||||||||| ||||    
T  18748455 gctattcaatgggttcatgaactaagacttcaaaatgttgattttgaggttgattcgaaacgtgtagcagattattttaaccgaagcaa 18748543  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 237
Target Start/End: Original strand, 30147905 - 30148002
Alignment:
Q  140 aaatgtggatttcgaggttgattcgaagcgtgtagcggactattttaaccgaggcaatggtgatatcacaaaatttggggtcattatggatagcaata 237  Q
    |||||||||||| || |||||||||||||| || || ||||| ||||| || ||||| |  ||||||||  ||||||| |  |||||| |||||||||    
T  30147905 aaatgtggattttgaagttgattcgaagcgagtggctgactactttaatcggggcaacgaagatatcaccgaatttggagctattatgaatagcaata 30148002  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 155
Target Start/End: Original strand, 26622507 - 26622554
Alignment:
Q  108 gctatccattgggttcatgagctacaactccaaaatgtggatttcgag 155  Q
    |||||||| |||||||||||||||||||||| |||||| |||||||||    
T  26622507 gctatccagtgggttcatgagctacaactcccaaatgtcgatttcgag 26622554  T

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