View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9842_high_11 (Length: 239)
Name: NF9842_high_11
Description: NF9842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9842_high_11 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 15 - 239
Target Start/End: Original strand, 47095854 - 47096077
Alignment:
| Q |
15 |
aattttatcatgcaggagtacactaggaatcggttgaacaaactcaggtatttatcacctctcgaaaatgtctttggcctagtccacattttctttctta |
114 |
Q |
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| T |
47095854 |
aattttatcatgcaggagtacactaggaatcggttgaacaaactcaggtatttatcacctctcgaaaatgtctttggcctagtccacattttctttctta |
47095953 |
T |
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| Q |
115 |
tacttattttctttcggctaatataatttgtatgttgcttcttgcatgacttttggttttnnnnnnnntgatccaatcgattttgacataaaaagagaga |
214 |
Q |
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| T |
47095954 |
tacttattttctttcggataatataatttgtatgttgcttcttgcatgacttttgg-tttaaaaaaaatgatccaatcgattttgacataaaaagagaga |
47096052 |
T |
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| Q |
215 |
caatatataactcaagcatctccta |
239 |
Q |
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| T |
47096053 |
caatatataactcaagcatctccta |
47096077 |
T |
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