View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9842_high_2 (Length: 410)

Name: NF9842_high_2
Description: NF9842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9842_high_2
NF9842_high_2
[»] chr1 (4 HSPs)
chr1 (19-400)||(50508067-50508446)
chr1 (275-400)||(50475699-50475824)
chr1 (125-171)||(50509167-50509213)
chr1 (140-193)||(50475915-50475968)
[»] chr6 (2 HSPs)
chr6 (99-365)||(10783082-10783344)
chr6 (125-189)||(10782628-10782692)
[»] chr8 (2 HSPs)
chr8 (99-365)||(23438821-23439083)
chr8 (117-365)||(23438297-23438548)
[»] chr2 (2 HSPs)
chr2 (99-341)||(8673832-8674070)
chr2 (120-365)||(8674203-8674448)


Alignment Details
Target: chr1 (Bit Score: 355; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 19 - 400
Target Start/End: Complemental strand, 50508446 - 50508067
Alignment:
Q  19 tgtactacatcttttaacttgtataaaacaaggctaggccacaatgtatgtagacttaatcttggattcttctgtttcagtttcaaaacacatcaattaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  50508446 tgtactacatcttttaacttgtataaaacaaggctaggccacaatgtatgtagacttaatcttggattcttctgtttcagtttcaaaaca--tcaattaa 50508349  T
Q  119 ttaaaatatttttagaatgacaacaaaatagatttacctcatcttttctcactttccatgaaggcccttccatttcttggatttccctggcgtctaccat 218  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50508348 ttaaaatatttttagaatgaaaacaaaatagatttacctcatcttttctcactttccatgaaggcccttccatttcttggatttccctggcgtctaccat 50508249  T
Q  219 tgcatctgctagcatacgtgcatgtcttatatcgtctgcttgatcaaatgtcgaacgttgaactccaatgatagcctcagaattgtcttctttgatactt 318  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  50508248 tgcatctgctggcatacgtgcatgtcttatatcgtctgcttgatcaaatgtcgaacgttgaactccaatgacagcctcaggattgtcttctttgatactt 50508149  T
Q  319 gaggtcccacttgcaggcctttggtcgatagtatcaactagcttttccatcaagtgtgtagagtcgggaacaaatttctctg 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50508148 gaggtcccacttgcaggcctttggtcgatagtatcaactagcttttccatcaagtgtgtagagtcgggaacaaatttctctg 50508067  T

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Target: chr1; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 275 - 400
Target Start/End: Complemental strand, 50475824 - 50475699
Alignment:
Q  275 gttgaactccaatgatagcctcagaattgtcttctttgatacttgaggtcccacttgcaggcctttggtcgatagtatcaactagcttttccatcaagtg 374  Q
    |||||||| |||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||| || | ||||||| ||||||||  |||| |    
T  50475824 gttgaacttcaatgacagcctcaggattgtcttctttgatacttgaggttccacttgcaggcctttggtcaatggaatcaactggcttttccgccaagag 50475725  T
Q  375 tgtagagtcgggaacaaatttctctg 400  Q
    ||||||||| |||| |||||||||||    
T  50475724 tgtagagtcaggaagaaatttctctg 50475699  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 125 - 171
Target Start/End: Complemental strand, 50509213 - 50509167
Alignment:
Q  125 tatttttagaatgacaacaaaatagatttacctcatcttttctcact 171  Q
    |||||||||||| | ||||||||||||||||||| |||||| |||||    
T  50509213 tatttttagaataaaaacaaaatagatttacctcttcttttttcact 50509167  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 193
Target Start/End: Complemental strand, 50475968 - 50475915
Alignment:
Q  140 aacaaaatagatttacctcatcttttctcactttccatgaaggcccttccattt 193  Q
    |||| |||||||||||||| ||||||||||||||   ||||| |||||||||||    
T  50475968 aacataatagatttacctcttcttttctcactttaactgaagacccttccattt 50475915  T

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Target: chr6 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 99 - 365
Target Start/End: Original strand, 10783082 - 10783344
Alignment:
Q  99 tttcaaaacacatcaattaattaaaatatttttagaatgacaacaaaatagatttacctcatcttttctcactttccatgaaggcccttccatttcttgg 198  Q
    ||||||||||||||||||    |||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||    
T  10783082 tttcaaaacacatcaatt----aaaatatttttagaatgaaaacaacatagatttacctcttcttttctcactttccatgaaggcccttccttttcttgg 10783177  T
Q  199 atttccctggcgtctaccattgcatctgctagcatacgtgcatgtcttatatcgtctgcttgatcaaatgtcgaacgttgaactccaatgatagcctcag 298  Q
    |||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||     
T  10783178 atttccctggcgtctaccattgcatctgctggcatacgtgcctgtcttgtatcgtctgcttgatcaaatgccgaacgttgaactccaatgacagcctcaa 10783277  T
Q  299 aattgtcttctttgatacttgaggtcccacttgcaggcctttggtcgatagtatcaactagcttttc 365  Q
     |||||||||||||||||||||||| |||||||||||||||||| | |||  |||||||||||||||    
T  10783278 gattgtcttctttgatacttgaggttccacttgcaggcctttggcccataaaatcaactagcttttc 10783344  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 189
Target Start/End: Original strand, 10782628 - 10782692
Alignment:
Q  125 tatttttagaatgacaacaaaatagatttacctcatcttttctcactttccatgaaggcccttcc 189  Q
    |||||||||||| | ||||||||||||||||||| |||||| ||||| |   |||||||||||||    
T  10782628 tatttttagaataaaaacaaaatagatttacctcttcttttttcactgtaggtgaaggcccttcc 10782692  T

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Target: chr8 (Bit Score: 166; Significance: 1e-88; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 99 - 365
Target Start/End: Original strand, 23438821 - 23439083
Alignment:
Q  99 tttcaaaacacatcaattaattaaaatatttttagaatgacaacaaaatagatttacctcatcttttctcactttccatgaaggcccttccatttcttgg 198  Q
    ||||||||||||||||||    |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  23438821 tttcaaaacacatcaatt----aaaatatttttagaatgaaaacaaaatagatttacctcttcttttctcactttccatgcaggcccttccatttcttgg 23438916  T
Q  199 atttccctggcgtctaccattgcatctgctagcatacgtgcatgtcttatatcgtctgcttgatcaaatgtcgaacgttgaactccaatgatagcctcag 298  Q
    |||||||||||||||||||||||||||||| |||||||||| |||||| |||| || ||||||||||||| | |||||||||||||||||| |||||||     
T  23438917 atttccctggcgtctaccattgcatctgctggcatacgtgcctgtcttctatcatccgcttgatcaaatgccaaacgttgaactccaatgacagcctcaa 23439016  T
Q  299 aattgtcttctttgatacttgaggtcccacttgcaggcctttggtcgatagtatcaactagcttttc 365  Q
     | ||||||||||||||||||||||   |||||||||||||||  | |||| |||||||||||||||    
T  23439017 gactgtcttctttgatacttgaggttttacttgcaggcctttgtcccatagaatcaactagcttttc 23439083  T

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Target: chr8; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 117 - 365
Target Start/End: Complemental strand, 23438548 - 23438297
Alignment:
Q  117 aattaaaatatttttagaatgacaacaaaatagatttacctcatcttttctcactttccatgaaggcccttccatttcttggatttccctggcgtctacc 216  Q
    |||||||||||||||| ||||| | ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  23438548 aattaaaatatttttataatgaaagcaaaatagatttacctcttcttttctcactttccatgaaggccgttccatttcttggatttccctggcgtctacc 23438449  T
Q  217 attgcatctgctagcatacgtgcatgtcttatatcgtctgcttgatcaaatgtcgaacgttgaactccaatgatagcctc-agaat---tgtcttctttg 312  Q
    | |||||||| | |||||||||| |||||| ||   || ||||||||||||| || ||||||||||||||||| |||||| ||| |   |||||||||||    
T  23438448 actgcatctggtggcatacgtgcctgtcttgtacattcggcttgatcaaatgccg-acgttgaactccaatgacagcctcaagactgtctgtcttctttg 23438350  T
Q  313 atacttgaggtcccacttgcaggcctttggtcgatagtatcaactagcttttc 365  Q
    ||||||||||| |||||||||||||||||  | |||| |||||||||||||||    
T  23438349 atacttgaggttccacttgcaggcctttgtcccatagaatcaactagcttttc 23438297  T

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Target: chr2 (Bit Score: 158; Significance: 6e-84; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 99 - 341
Target Start/End: Complemental strand, 8674070 - 8673832
Alignment:
Q  99 tttcaaaacacatcaattaattaaaatatttttagaatgacaacaaaatagatttacctcatcttttctcactttccatgaaggcccttccatttcttgg 198  Q
    ||||||||||||||||||||    ||||||||||||| || ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  8674070 tttcaaaacacatcaattaa----aatatttttagaacgaaaacaaaatagatttacctcttcttttctcactttctatgaaggcccttccatttcttgg 8673975  T
Q  199 atttccctggcgtctaccattgcatctgctagcatacgtgcatgtcttatatcgtctgcttgatcaaatgtcgaacgttgaactccaatgatagcctcag 298  Q
    |||||||| ||||||||||||||||||||| ||||| |||| |||||| |||| || |||||||||||||||||||||||||||||||||| |||||||     
T  8673974 atttccctagcgtctaccattgcatctgctggcatatgtgcctgtcttgtatcatccgcttgatcaaatgtcgaacgttgaactccaatgacagcctcaa 8673875  T
Q  299 aattgtcttctttgatacttgaggtcccacttgcaggcctttg 341  Q
     | |||||||||||||||||||||| ||||||||||| |||||    
T  8673874 gactgtcttctttgatacttgaggttccacttgcaggtctttg 8673832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 120 - 365
Target Start/End: Original strand, 8674203 - 8674448
Alignment:
Q  120 taaaatatttttagaatgacaacaaaatagatttacctcatcttttctcactttccatgaaggcccttccatttcttggatttccctggcgtctaccatt 219  Q
    |||| ||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  8674203 taaactatttctagaatgaaaacaaaatagatttacctcttcttttctcactttccatgaaggcccttccatttctttgatttccctggtgtctaccatt 8674302  T
Q  220 gcatctgctagcatacgtgcatgtcttatatcgtctgcttgatcaaatgtcgaacgttgaactccaatgatagcctcagaattgtcttctttgatacttg 319  Q
    ||||||||| |||||||||  |||||| |||| || ||||||| ||||| |||||||||||||| ||||| |||||||  | ||||||||||||||||||    
T  8674303 gcatctgctggcatacgtgtctgtcttgtatcatccgcttgattaaatgccgaacgttgaactctaatgacagcctcaagactgtcttctttgatacttg 8674402  T
Q  320 aggtcccacttgcaggcctttggtcgatagtatcaactagcttttc 365  Q
    |||| |||||||||||||||||  | |||| |||||||||||||||    
T  8674403 aggttccacttgcaggcctttgtcccatagaatcaactagcttttc 8674448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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