View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9842_low_10 (Length: 341)
Name: NF9842_low_10
Description: NF9842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9842_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 18 - 331
Target Start/End: Complemental strand, 2578550 - 2578237
Alignment:
| Q |
18 |
ctattgaatctagatactagaagtgctttatttctttaatatcaatgatttaaagacttagatttaaatattctgttcatatctaatgactatatggtaa |
117 |
Q |
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| T |
2578550 |
ctattgaatctagatactagaagtgctttatttctttaatatcaatgatttaaagacttagatttaaatattctgttcatatctaatgactatatgctaa |
2578451 |
T |
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| Q |
118 |
attagtttcttgcttgaatcacataaatgatgatcaatatgtttgatactgatactgtttgattatgtagatggacaacctttgccaatcagtgaaattg |
217 |
Q |
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| T |
2578450 |
attagtttcttgcttgaatcacataaatgatgatcaatatgtttgatactgatactgtttgattatgtagatggacaacctttgccaatcagtgaaattg |
2578351 |
T |
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| Q |
218 |
aaaaggaccttcctggacattctgcagagttgctattagaatccaaatggacatttataactcaagatgtaagtaacctgtttcaatatttttccttttc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2578350 |
aaaaggaccttcctggacattctgcagagttgctattagaatccaaatggacatttataactcaagatgtaagtaacctgtttcaatatttttccttttc |
2578251 |
T |
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| Q |
318 |
tttaaatgcctatg |
331 |
Q |
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|||||||||||||| |
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| T |
2578250 |
tttaaatgcctatg |
2578237 |
T |
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