View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9842_low_13 (Length: 250)
Name: NF9842_low_13
Description: NF9842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9842_low_13 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 8 - 250
Target Start/End: Original strand, 28867701 - 28867940
Alignment:
| Q |
8 |
aagcaaaggactgcacatattcctgaagaattctaaacatacataacaacaattatgtagaatatttgagtataaaaatatttggtattgcttttgaatt |
107 |
Q |
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| T |
28867701 |
aagcaaaggactgcacatattcctgaagaattctaaacatacataacaacaattatgtagaatatttgagtataaaaatatttgatattgcttttgaatt |
28867800 |
T |
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| Q |
108 |
ttgattacaaccttttttaaacgagtttgtatgtactcattacttatgctttttggtgaaaggaattttccttgtctgctagcaggttcttgggactttt |
207 |
Q |
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| T |
28867801 |
ttgattacaaccttttttaaacgagtttgtatgtactcactacttgtgctttttagtgaaaggaatt---cctgtctcctaacaggttcttgggactttt |
28867897 |
T |
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| Q |
208 |
gtgttgtttgtctttcttgcaaggtttattagtgctagcagat |
250 |
Q |
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| T |
28867898 |
gtgttgtttgtctttcttgcaaggtttattagtgctagcagat |
28867940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 106 - 161
Target Start/End: Complemental strand, 6982886 - 6982831
Alignment:
| Q |
106 |
ttttgattacaaccttttttaaacgagtttgtatgtactcattacttatgcttttt |
161 |
Q |
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| T |
6982886 |
ttttgattacacccttttttgaacgagtttgtatgtgctcactacttatgcttttt |
6982831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 106 - 162
Target Start/End: Complemental strand, 11536303 - 11536247
Alignment:
| Q |
106 |
ttttgattacaaccttttttaaacgagtttgtatgtactcattacttatgctttttg |
162 |
Q |
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| T |
11536303 |
tttttattacacccttttttaaacgagtttgtatgtgctcactacttgtgctttttg |
11536247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 168
Target Start/End: Original strand, 3848315 - 3848365
Alignment:
| Q |
118 |
ccttttttaaacgagtttgtatgtactcattacttatgctttttggtgaaa |
168 |
Q |
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| T |
3848315 |
cctttttgaaacgagtttgtattttctcactacttatgttttttggtgaaa |
3848365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 106 - 168
Target Start/End: Complemental strand, 33417483 - 33417421
Alignment:
| Q |
106 |
ttttgattacaaccttttttaaacgagtttgtatgtactcattacttatgctttttggtgaaa |
168 |
Q |
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| T |
33417483 |
ttttgattacaccctttttagaacgaatttgtatgtgctcactacttgtgctttttggtgaaa |
33417421 |
T |
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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 168
Target Start/End: Complemental strand, 6596568 - 6596506
Alignment:
| Q |
106 |
ttttgattacaaccttttttaaacgagtttgtatgtactcattacttatgctttttggtgaaa |
168 |
Q |
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| T |
6596568 |
ttttgattacaccctttttagaatgagtttggatgtgctcactacttatgcttttcggtgaaa |
6596506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 168
Target Start/End: Complemental strand, 40715984 - 40715936
Alignment:
| Q |
120 |
ttttttaaacgagtttgtatgtactcattacttatgctttttggtgaaa |
168 |
Q |
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| T |
40715984 |
tttttgaaacgagtttgtatgtgctcactacttgtgttttttggtgaaa |
40715936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 168
Target Start/End: Original strand, 18559729 - 18559791
Alignment:
| Q |
106 |
ttttgattacaaccttttttaaacgagtttgtatgtactcattacttatgctttttggtgaaa |
168 |
Q |
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| T |
18559729 |
ttttgattacgccctttttagaacgagtttgtatctgctcgttacttatactttttggtgaaa |
18559791 |
T |
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