View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9842_low_16 (Length: 239)
Name: NF9842_low_16
Description: NF9842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9842_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 30505698 - 30505476
Alignment:
| Q |
1 |
ttagggtgatgaatttattaagttagtggttacaaaatcttagttgctcgaaaccaaagttaatgtgttgaagaggaatatgaaagtgacggagattcgg |
100 |
Q |
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| T |
30505698 |
ttagggtgatgaatttattaagttagtggttacaaaatcttagttgctcgaaaccaaagttaatgtgttgaagaggaatatgaaagtgacggaaattcgg |
30505599 |
T |
|
| Q |
101 |
ttaaagagggaatagacgtgatggagactcaaatgaagagagatgtggaagctaaaattagtaaatgtgagatggatatagtgaaatatcagttgaatga |
200 |
Q |
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| T |
30505598 |
ttaaagagggaatggacgtgatggagactcaaatgaagagcgatgtggaagctaaaattagtaaatgtaagatggatatagtgaaatatcagttgaatga |
30505499 |
T |
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| Q |
201 |
aatgcaaatgtagttggaagaaa |
223 |
Q |
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| T |
30505498 |
aatgcaaatgtagttggaagaaa |
30505476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 174
Target Start/End: Original strand, 6538080 - 6538112
Alignment:
| Q |
142 |
gatgtggaagctaaaattagtaaatgtgagatg |
174 |
Q |
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| T |
6538080 |
gatgtggaagctaaaattagtaaatgtgagatg |
6538112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 174
Target Start/End: Original strand, 6538255 - 6538287
Alignment:
| Q |
142 |
gatgtggaagctaaaattagtaaatgtgagatg |
174 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
6538255 |
gatgtggaagctaaaattagtaaatgtgagatg |
6538287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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