View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9842_low_2 (Length: 488)
Name: NF9842_low_2
Description: NF9842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9842_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-107; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 12 - 217
Target Start/End: Complemental strand, 39001688 - 39001483
Alignment:
| Q |
12 |
agagaggcaatagagaacctgacactggatgtcgattcctagctgcttgtattccaaattagtgcatgcagagaacattgcaagatatctgtaaaattag |
111 |
Q |
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| T |
39001688 |
agagaggcaatagagaacctgacactggatgtcgattcctagctgcttgtattccaaattagtgcatgcagagaacattgcaagatatctgtaaaactag |
39001589 |
T |
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| Q |
112 |
catcaagatatgaattcatatttggtttaaatcaatacaactatttcagaataatttcattattttacataaataacaatgaagaggcaaagtaattttt |
211 |
Q |
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| T |
39001588 |
catcaagatatgaattcatatttggtttaaatcaatacaactacttcagaataatttcattattttacataaataacaatgaagaggcaaagtaattttt |
39001489 |
T |
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| Q |
212 |
tcttaa |
217 |
Q |
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|||||| |
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| T |
39001488 |
tcttaa |
39001483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 326 - 472
Target Start/End: Complemental strand, 39001354 - 39001219
Alignment:
| Q |
326 |
tgattttgctgacagcgtattagtcaaaggaaatgaagtacttaataatctaaaaggccataagcatggtttagaaagaataagaaaagggaataaaatt |
425 |
Q |
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| T |
39001354 |
tgattttgctgacagtgtattagtcaaagcaaatgaagtacttt-taatctaaaaggccataagcatggtttagaaagaataagaaaagg---------- |
39001266 |
T |
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| Q |
426 |
gaataaataacatatgtttaatatacgaactttatgactgcattttg |
472 |
Q |
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| T |
39001265 |
gcataaataacatatgtttaatatatgaactttatgactgcattttg |
39001219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 23 - 134
Target Start/End: Complemental strand, 38997517 - 38997406
Alignment:
| Q |
23 |
agagaacctgacactggatgtcgattcctagctgcttgtattccaaattagtgcatgcagagaacattgcaagatatctgtaaaattagcatcaagatat |
122 |
Q |
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| T |
38997517 |
agagaacctggcactggatgtcaatcccgtggtgtttgtattccaaactggtgcatgcagagaacattgcaagatacctgtaaaattagcatcgagatat |
38997418 |
T |
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| Q |
123 |
gaattcatattt |
134 |
Q |
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| T |
38997417 |
ggattcaaattt |
38997406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 239 - 277
Target Start/End: Complemental strand, 39001482 - 39001444
Alignment:
| Q |
239 |
tcacttcaagtaaaacagaaaggcttatagtcaaatagt |
277 |
Q |
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| T |
39001482 |
tcacttcaagtaaaacagaaaggcttatagtcaaatagt |
39001444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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