View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9842_low_4 (Length: 403)
Name: NF9842_low_4
Description: NF9842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9842_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 395
Target Start/End: Original strand, 42467243 - 42467637
Alignment:
| Q |
1 |
gaaactactcgttcttcacttccttaatcccaaataactctatattgtgtggttgtcattttccttggttctttctttgtattttcccccaaagattata |
100 |
Q |
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| T |
42467243 |
gaaactactcgttcttcacttccttaatcccaaataactctatattgtgtggttgtcattttccttggttctttctttgtattttcccccaaagattata |
42467342 |
T |
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| Q |
101 |
tataatggacaccaaagtgctttcttccggaatccattattcaaaattacccgaaagctacatcagacccgaatctgatagaccatgtctttctcaagtc |
200 |
Q |
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| T |
42467343 |
tataatggacaccaaagtgctttcttccggaatccattattcaaaattacccgaaagctacatcagacccgaatctgatagaccatgtctttctcaagtc |
42467442 |
T |
|
| Q |
201 |
tctgagttcgaaaatgttcctatcattgatttgggttctcacaacagaacacagattgtgcagcaaattggtgaagcatgcagctcctatggttttttcc |
300 |
Q |
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| T |
42467443 |
tctgagttcgaaaatgttcctatcattgatttgggttctcacaacagaacacagattgtgcagcaaattggtgaagcatgcagctcctatggttttttcc |
42467542 |
T |
|
| Q |
301 |
aggtctagccccatatttcaannnnnnngtttattcattattcaataaccatagatgaacagtgaagannnnnnnagataagcataacctttgct |
395 |
Q |
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| T |
42467543 |
aggtctagccccatatttcaatttttttgtttattcattattcaataaccatagatgaacaatgaagatttttttagataagcataacttttgct |
42467637 |
T |
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