View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9842_low_5 (Length: 402)

Name: NF9842_low_5
Description: NF9842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9842_low_5
NF9842_low_5
[»] chr1 (18 HSPs)
chr1 (19-392)||(3300731-3301103)
chr1 (19-392)||(43044997-43045367)
chr1 (19-183)||(43045656-43045820)
chr1 (19-183)||(43066587-43066751)
chr1 (19-183)||(43084084-43084248)
chr1 (34-183)||(45993419-45993568)
chr1 (259-392)||(43066861-43066994)
chr1 (259-392)||(43083841-43083974)
chr1 (19-360)||(45983624-45983953)
chr1 (268-392)||(38138019-38138143)
chr1 (317-392)||(43076774-43076849)
chr1 (19-183)||(38137772-38137936)
chr1 (38-177)||(7888710-7888849)
chr1 (34-183)||(40034625-40034768)
chr1 (270-392)||(7891113-7891235)
chr1 (270-360)||(7888848-7888938)
chr1 (268-321)||(50912450-50912503)
chr1 (268-323)||(40034852-40034907)
[»] chr4 (1 HSPs)
chr4 (19-392)||(4231462-4231840)
[»] chr6 (4 HSPs)
chr6 (19-180)||(7519631-7519792)
chr6 (19-180)||(7529002-7529163)
chr6 (269-392)||(7519882-7520005)
chr6 (269-390)||(7529419-7529540)
[»] chr5 (2 HSPs)
chr5 (19-182)||(16349349-16349512)
chr5 (303-392)||(16349144-16349233)
[»] chr8 (7 HSPs)
chr8 (70-183)||(4787429-4787536)
chr8 (270-392)||(1846486-1846608)
chr8 (25-220)||(4297648-4297840)
chr8 (270-392)||(4619686-4619808)
chr8 (268-391)||(4297480-4297603)
chr8 (117-183)||(4619893-4619959)
chr8 (347-391)||(4787648-4787692)
[»] chr2 (8 HSPs)
chr2 (34-183)||(34691036-34691185)
chr2 (34-183)||(34713448-34713597)
chr2 (269-392)||(34690843-34690966)
chr2 (269-392)||(34713255-34713378)
chr2 (19-183)||(33861045-33861209)
chr2 (100-182)||(16232380-16232462)
chr2 (268-392)||(16232184-16232308)
chr2 (351-392)||(33860838-33860879)
[»] chr7 (1 HSPs)
chr7 (340-392)||(39242500-39242552)


Alignment Details
Target: chr1 (Bit Score: 362; Significance: 0; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 19 - 392
Target Start/End: Complemental strand, 3301103 - 3300731
Alignment:
Q  19 atgattactggaacatcccaagctgattgtgctgttctgatcattgattccactaccggtggttttgaagccggtatttcaaaggatgggcagacccgtg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  3301103 atgattactggaacatcccaagctgattgtgctgttctgatcattgattccactaccggtggttttgaagccggtatatcaaaggatgggcagacccgtg 3301004  T
Q  119 aacacgctcttcttgctttcactcttggtgtgaagcaaatgatttgttgctgcaacaaggtatttgaacgttttagccctttgaagatgcatttgattat 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3301003 aacacgctcttcttgctttcactcttggtgtgaagcaaatgattt-ttgctgcaacaaggtatttgaacgttttagccctttgaagatgcatttgattat 3300905  T
Q  219 ttctgtgattactttatttatacaaattctcattgtcttgctatcgtgaacagatggatgccactacacctaagtactcgaagggtaggtatgaagaaat 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3300904 ttctgtgattactttatttatacaaattctcattgtcttgctatcgtgaacagatggatgccactacacctaagtactcgaagggtaggtatgaagaaat 3300805  T
Q  319 tgtgaaggaagtttcatcctatttgaagaaggttggctataacccagacaaaattccatttgttcccatctctg 392  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3300804 tgtgaaggaagtttcatcctatttgaagaaggttggctataacccagacaaaattccatttgttcccatctctg 3300731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 19 - 392
Target Start/End: Complemental strand, 43045367 - 43044997
Alignment:
Q  19 atgattactggaacatcccaagctgattgtgctgttctgatcattgattccactaccggtggttttgaagccggtatttcaaaggatgggcagacccgtg 118  Q
    ||||| || ||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||    
T  43045367 atgatcaccggaacatcccaagctgattgtgccgttctcatcattgattccactactggtggttttgaagccggtatttctaaggatggtcagacccgtg 43045268  T
Q  119 aacacgctcttcttgctttcactcttggtgtgaagcaaatgatttgttgctgcaacaaggtatttgaacgttttagccctttgaagatg--catttgatt 216  Q
    |||| ||||| |||||||||||||||||||||||||||||||| || || ||||||||||||||| |   ||| ||||| |||||| ||   ||||||||    
T  43045267 aacatgctctccttgctttcactcttggtgtgaagcaaatgatctgctgttgcaacaaggtatttaatattttcagccccttgaagttgtatatttgatt 43045168  T
Q  217 atttctgtgattactttattta--tacaaattctcattgtcttgctatcgtgaacagatggatgccactacacctaagtactcgaagggtaggtatgaag 314  Q
    |||| | | |||  ||||||||  ||| ||||  |||       ||||| ||||||||||||||| |||||||| |||||||| |||||||| ||||| |    
T  43045167 atttttataattcatttatttaagtactaatttgcat-------ctatcttgaacagatggatgctactacacccaagtactccaagggtagatatgatg 43045075  T
Q  315 aaattgtgaaggaagtttcatcctatttgaagaaggttggctataacccagacaaaattccatttgttcccatctctg 392  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43045074 aaattgtgaaggaagtttcatcctatttgaagaaggttggctataacccagacaaaattccatttgttcccatctctg 43044997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 19 - 183
Target Start/End: Complemental strand, 43045820 - 43045656
Alignment:
Q  19 atgattactggaacatcccaagctgattgtgctgttctgatcattgattccactaccggtggttttgaagccggtatttcaaaggatgggcagacccgtg 118  Q
    ||||| || ||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||    
T  43045820 atgatcaccggaacatcccaagctgattgtgccgttctcatcattgattccactactggtggttttgaagccggtatttctaaggatggtcagacccgtg 43045721  T
Q  119 aacacgctcttcttgctttcactcttggtgtgaagcaaatgatttgttgctgcaacaaggtattt 183  Q
    |||| ||||| |||||||||||||||||||||||||||||||| || || |||||||||||||||    
T  43045720 aacatgctctccttgctttcactcttggtgtgaagcaaatgatctgctgttgcaacaaggtattt 43045656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 19 - 183
Target Start/End: Original strand, 43066587 - 43066751
Alignment:
Q  19 atgattactggaacatcccaagctgattgtgctgttctgatcattgattccactaccggtggttttgaagccggtatttcaaaggatgggcagacccgtg 118  Q
    ||||| || ||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||    
T  43066587 atgatcaccggaacatcccaagctgattgtgccgttctcatcattgattccactactggtggttttgaagccggtatttctaaggatggtcagacccgtg 43066686  T
Q  119 aacacgctcttcttgctttcactcttggtgtgaagcaaatgatttgttgctgcaacaaggtattt 183  Q
    |||| ||||| |||||||||||||||||||||||||||||||| || || |||||||||||||||    
T  43066687 aacatgctctccttgctttcactcttggtgtgaagcaaatgatctgctgttgcaacaaggtattt 43066751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 19 - 183
Target Start/End: Complemental strand, 43084248 - 43084084
Alignment:
Q  19 atgattactggaacatcccaagctgattgtgctgttctgatcattgattccactaccggtggttttgaagccggtatttcaaaggatgggcagacccgtg 118  Q
    ||||| || ||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||    
T  43084248 atgatcaccggaacatcccaagctgattgtgccgttctcatcattgattccactactggtggttttgaagccggtatttctaaggatggtcagacccgtg 43084149  T
Q  119 aacacgctcttcttgctttcactcttggtgtgaagcaaatgatttgttgctgcaacaaggtattt 183  Q
    |||| ||||| |||||||||||||||||||||||||||||||| || || |||||||||||||||    
T  43084148 aacatgctctccttgctttcactcttggtgtgaagcaaatgatctgctgttgcaacaaggtattt 43084084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 34 - 183
Target Start/End: Original strand, 45993419 - 45993568
Alignment:
Q  34 tcccaagctgattgtgctgttctgatcattgattccactaccggtggttttgaagccggtatttcaaaggatgggcagacccgtgaacacgctcttcttg 133  Q
    ||||||||||||||||||||||| |||||||||||||||||  ||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||    
T  45993419 tcccaagctgattgtgctgttctcatcattgattccactactcgtggttttgaagccggtatttcaaaggatggtcagactcgtgaacatgctcttcttg 45993518  T
Q  134 ctttcactcttggtgtgaagcaaatgatttgttgctgcaacaaggtattt 183  Q
    | ||||||||||||||||| |||||||| |||||||||||||||||||||    
T  45993519 ccttcactcttggtgtgaatcaaatgatctgttgctgcaacaaggtattt 45993568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 259 - 392
Target Start/End: Original strand, 43066861 - 43066994
Alignment:
Q  259 ctatcgtgaacagatggatgccactacacctaagtactcgaagggtaggtatgaagaaattgtgaaggaagtttcatcctatttgaagaaggttggctat 358  Q
    ||||| ||||||||||||||| |||||||| |||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  43066861 ctatcttgaacagatggatgctactacacccaagtactccaagggtagatatgatgaaattgtgaaggaagtttcatcctatttgaagaaggttggctat 43066960  T
Q  359 aacccagacaaaattccatttgttcccatctctg 392  Q
    ||||||||||||||||||||||||||||||||||    
T  43066961 aacccagacaaaattccatttgttcccatctctg 43066994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 259 - 392
Target Start/End: Complemental strand, 43083974 - 43083841
Alignment:
Q  259 ctatcgtgaacagatggatgccactacacctaagtactcgaagggtaggtatgaagaaattgtgaaggaagtttcatcctatttgaagaaggttggctat 358  Q
    ||||| ||||||||||||||| |||||||| |||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  43083974 ctatcttgaacagatggatgctactacacccaagtactccaagggtagatatgatgaaattgtgaaggaagtttcatcctatttgaagaaggttggctat 43083875  T
Q  359 aacccagacaaaattccatttgttcccatctctg 392  Q
    ||||||||||||||||||||||||||||||||||    
T  43083874 aacccagacaaaattccatttgttcccatctctg 43083841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 19 - 360
Target Start/End: Original strand, 45983624 - 45983953
Alignment:
Q  19 atgattactggaacatcccaagctgattgtgctgttctgatcattgattccactaccggtggttttgaagccggtatttcaaaggatgggcagacccgtg 118  Q
    ||||| || ||||| ||||||||||| |||||||||||  |||||||||||||||| ||||||||||||||||||||      | |||| ||||||||||    
T  45983624 atgatcaccggaacgtcccaagctgactgtgctgttctcgtcattgattccactactggtggttttgaagccggtat------gaatggtcagacccgtg 45983717  T
Q  119 aacacgctcttcttgctttcactcttggtgtgaagcaaatgatttgttgctgcaacaaggtatttgaacgttttagccctttgaaga-tgcatttgatta 217  Q
    |||| ||||||||||| ||||||||||||||||| |||||||| || |||||||||||||||||| |   |||  |||| || |||| || |||||||||    
T  45983718 aacatgctcttcttgccttcactcttggtgtgaatcaaatgatctgctgctgcaacaaggtattt-atattttccgcccctttaagattgtatttgatta 45983816  T
Q  218 tttctgtgattactttatttatacaaattctcattgtcttgctatcgtgaacagatggatgccactacacctaagtactcgaagggtaggtatgaagaaa 317  Q
    ||| |     || || ||||||| || | || ||| || | ||| |  | |||||||||||||||||||||||| ||||| | || |||||||| |||||    
T  45983817 ttttt----ataattcatttatataagtactaattatcat-ctaccccg-acagatggatgccactacacctaaatactctagggataggtatgtagaaa 45983910  T
Q  318 ttgtgaaggaagtttcatcctatttgaagaaggttggctataa 360  Q
    |||||| | |||||| | ||| |||||| ||||||||||||||    
T  45983911 ttgtgaggcaagttttaccctgtttgaataaggttggctataa 45983953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 268 - 392
Target Start/End: Original strand, 38138019 - 38138143
Alignment:
Q  268 acagatggatgccactacacctaagtactcgaagggtaggtatgaagaaattgtgaaggaagtttcatcctatttgaagaaggttggctataacccagac 367  Q
    ||||||||||||||||||||| || ||||| |||| ||||||||||||||||||||||||| ||||| ||| |||||   | ||||||||||||| |||     
T  38138019 acagatggatgccactacacccaaatactccaaggataggtatgaagaaattgtgaaggaattttcaccctttttgattgatgttggctataacctagat 38138118  T
Q  368 aaaattccatttgttcccatctctg 392  Q
     ||||||||||||||||||||||||    
T  38138119 gaaattccatttgttcccatctctg 38138143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 317 - 392
Target Start/End: Original strand, 43076774 - 43076849
Alignment:
Q  317 attgtgaaggaagtttcatcctatttgaagaaggttggctataacccagacaaaattccatttgttcccatctctg 392  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  43076774 attgtggaggaagtttcatcctatttgaagaaggttggctataacccagaaaacattccatttgttcccatctctg 43076849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 19 - 183
Target Start/End: Original strand, 38137772 - 38137936
Alignment:
Q  19 atgattactggaacatcccaagctgattgtgctgttctgatcattgattccactaccggtggttttgaagccggtatttcaaaggatgggcagacccgtg 118  Q
    |||||||| || || ||||||||||| |||||||||||  ||||||||||||| || ||| |||||||||| |||  |||  |||| || ||||||  ||    
T  38137772 atgattaccgggacgtcccaagctgactgtgctgttctcgtcattgattccacaactggtagttttgaagctggttattctcaggaaggtcagacctctg 38137871  T
Q  119 aacacgctcttcttgctttcactcttggtgtgaagcaaatgatttgttgctgcaacaaggtattt 183  Q
    |||| ||||||||||| |||  ||||||||||   |||||||| || ||||||||||||||||||    
T  38137872 aacatgctcttcttgcattcgttcttggtgtgcgccaaatgatctgctgctgcaacaaggtattt 38137936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 38 - 177
Target Start/End: Original strand, 7888710 - 7888849
Alignment:
Q  38 aagctgattgtgctgttctgatcattgattccactaccggtggttttgaagccggtatttcaaaggatgggcagacccgtgaacacgctcttcttgcttt 137  Q
    ||||||||||||||||||| |||||||||||||| || |||||||||||||||||| |||  |||||||| ||||||  |||||| | ||  ||||| ||    
T  7888710 aagctgattgtgctgttctcatcattgattccacaactggtggttttgaagccggtttttgtaaggatggtcagaccactgaacatgttcaacttgcctt 7888809  T
Q  138 cactcttggtgtgaagcaaatgatttgttgctgcaacaag 177  Q
    | |||| |||||  |  ||||||| || ||||||||||||    
T  7888810 cgctctcggtgtttaaaaaatgatctgctgctgcaacaag 7888849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 34 - 183
Target Start/End: Original strand, 40034625 - 40034768
Alignment:
Q  34 tcccaagctgattgtgctgttctgatcattgattccactaccggtggttttgaagccggtatttcaaaggatgggcagacccgtgaacacgctcttcttg 133  Q
    |||| |||||| ||||||||||| |||||||||||||  || ||| |||||||  | |||||  |||    ||| ||||||  |||||| ||||||||||    
T  40034625 tccctagctgactgtgctgttctcatcattgattccagaactggtagttttgagactggtat--caa----tggtcagaccactgaacatgctcttcttg 40034718  T
Q  134 ctttcactcttggtgtgaagcaaatgatttgttgctgcaacaaggtattt 183  Q
    | |  |||||||||||||| |||||||| || ||||||||||||||||||    
T  40034719 cctatactcttggtgtgaatcaaatgatctgctgctgcaacaaggtattt 40034768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 270 - 392
Target Start/End: Original strand, 7891113 - 7891235
Alignment:
Q  270 agatggatgccactacacctaagtactcgaagggtaggtatgaagaaattgtgaaggaagtttcatcctatttgaagaaggttggctataacccagacaa 369  Q
    ||||||||||||||||||| || ||||| |||| |||||||||| |||||||||   || ||||| ||| |||||   ||||||||||||||| ||  ||    
T  7891113 agatggatgccactacacccaaatactccaaggataggtatgaacaaattgtgagtcaaatttcaccctttttgagtgaggttggctataacctaggtaa 7891212  T
Q  370 aattccatttgttcccatctctg 392  Q
    |||||| ||| | || |||||||    
T  7891213 aattccttttatccctatctctg 7891235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 270 - 360
Target Start/End: Original strand, 7888848 - 7888938
Alignment:
Q  270 agatggatgccactacacctaagtactcgaagggtaggtatgaagaaattgtgaaggaagtttcatcctatttgaagaaggttggctataa 360  Q
    ||||||||||||||||||| |  |||||  |||  ||||||||||||||||||||  |||||||| ||| |||||   |||||||||||||    
T  7888848 agatggatgccactacacccatatactcctaggacaggtatgaagaaattgtgaatcaagtttcaccctttttgagagaggttggctataa 7888938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 268 - 321
Target Start/End: Complemental strand, 50912503 - 50912450
Alignment:
Q  268 acagatggatgccactacacctaagtactcgaagggtaggtatgaagaaattgt 321  Q
    |||||||||||| ||||| || || ||||| |||||||||||||||||||||||    
T  50912503 acagatggatgctactactcccaaatactccaagggtaggtatgaagaaattgt 50912450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 268 - 323
Target Start/End: Original strand, 40034852 - 40034907
Alignment:
Q  268 acagatggatgccactacacctaagtactcgaagggtaggtatgaagaaattgtga 323  Q
    |||||||||||| |||||||| || ||||| |||||||||| ||||||| ||||||    
T  40034852 acagatggatgcaactacacccaaatactctaagggtaggtttgaagaacttgtga 40034907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 19 - 392
Target Start/End: Complemental strand, 4231840 - 4231462
Alignment:
Q  19 atgattactggaacatcccaagctgattgtgctgttctgatcattgattccactaccggtggttttgaagccggtatttcaaaggatgggcagacccgtg 118  Q
    ||||||||||| |||||||||||||||||||||||||| |||||||||||||| || |||||||||||||| |||||||| |||||||| ||||| ||||    
T  4231840 atgattactggtacatcccaagctgattgtgctgttctcatcattgattccaccactggtggttttgaagctggtatttccaaggatggtcagactcgtg 4231741  T
Q  119 aacacgctcttcttgctttcactcttggtgtgaagcaaatgatttgttgctgcaacaaggtatttgaac------gttttag----ccctttgaagatgc 208  Q
    |||| ||||| |||||||||||||||||||||| ||||||||| || ||||||||||||||||||||||       |||| |    ||||||| || |||    
T  4231740 aacatgctctccttgctttcactcttggtgtgaggcaaatgatctgctgctgcaacaaggtatttgaactgtaaattttttgattcccctttgtagttgc 4231641  T
Q  209 atttgattatttctgtgattactttatttatacaaattctcattgtcttgctatcgtgaacagatggatgccactacacctaagtactcgaagggtaggt 308  Q
    |||||  ||||| |     || |||  |||||||| | || ||| | |||||||| |||||||||||| |||||||| || |||||||| ||| | ||||    
T  4231640 atttggatattttt----ataatttgcttatacaagtactgatt-ttttgctatcttgaacagatggacgccactactcccaagtactccaagagcaggt 4231546  T
Q  309 atgaagaaattgtgaaggaagtttcatcctatttgaagaaggttggctataacccagacaaaattccatttgttcccatctctg 392  Q
    |||| ||||||||||||||||| ||||||||  ||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  4231545 atgatgaaattgtgaaggaagtatcatcctacatgaagaaggttggctataacccagataaaattccatttgttcccatctctg 4231462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 1e-38; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 19 - 180
Target Start/End: Original strand, 7519631 - 7519792
Alignment:
Q  19 atgattactggaacatcccaagctgattgtgctgttctgatcattgattccactaccggtggttttgaagccggtatttcaaaggatgggcagacccgtg 118  Q
    |||||||||||||| ||||| |||||||||||||| || |||||||| ||||| || |||||||||||||| ||||| || |||||||| ||||||||||    
T  7519631 atgattactggaacctcccaggctgattgtgctgtccttatcattgactccaccactggtggttttgaagctggtatctctaaggatggacagacccgtg 7519730  T
Q  119 aacacgctcttcttgctttcactcttggtgtgaagcaaatgatttgttgctgcaacaaggta 180  Q
    | || ||||||||||| || |||||||| |||||||| ||||| ||||| || |||||||||    
T  7519731 agcatgctcttcttgcatttactcttggagtgaagcagatgatctgttgttgtaacaaggta 7519792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 19 - 180
Target Start/End: Original strand, 7529002 - 7529163
Alignment:
Q  19 atgattactggaacatcccaagctgattgtgctgttctgatcattgattccactaccggtggttttgaagccggtatttcaaaggatgggcagacccgtg 118  Q
    |||||||||||||| ||||| ||||||||||| || || |||||||| ||||| || |||||||||||||| ||||| || |||||||| ||||||||||    
T  7529002 atgattactggaacctcccaggctgattgtgccgtgcttatcattgactccaccactggtggttttgaagctggtatctctaaggatggacagacccgtg 7529101  T
Q  119 aacacgctcttcttgctttcactcttggtgtgaagcaaatgatttgttgctgcaacaaggta 180  Q
    | |||||||||||||| || |||||||| |||||||| ||||| ||||| || |||||||||    
T  7529102 agcacgctcttcttgcatttactcttggagtgaagcagatgatctgttgttgtaacaaggta 7529163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 269 - 392
Target Start/End: Original strand, 7519882 - 7520005
Alignment:
Q  269 cagatggatgccactacacctaagtactcgaagggtaggtatgaagaaattgtgaaggaagtttcatcctatttgaagaaggttggctataacccagaca 368  Q
    ||||||||||| || || || |||||||| |||| |||||| || ||||| |||||||||||||||||||| |||||||||||||| || ||||||||||    
T  7519882 cagatggatgctaccacccccaagtactcaaaggctaggtacgatgaaatcgtgaaggaagtttcatcctacttgaagaaggttggttacaacccagaca 7519981  T
Q  369 aaattccatttgttcccatctctg 392  Q
    |||| ||||||||||| |||||||    
T  7519982 aaatcccatttgttccaatctctg 7520005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 269 - 390
Target Start/End: Original strand, 7529419 - 7529540
Alignment:
Q  269 cagatggatgccactacacctaagtactcgaagggtaggtatgaagaaattgtgaaggaagtttcatcctatttgaagaaggttggctataacccagaca 368  Q
    ||||||||||| || || || |||||||| |||| |||||| || ||||| |||||||||||||||||||| |||||||||||||| || ||||| ||||    
T  7529419 cagatggatgctaccacccccaagtactcaaaggctaggtacgatgaaatcgtgaaggaagtttcatcctacttgaagaaggttggttacaaccctgaca 7529518  T
Q  369 aaattccatttgttcccatctc 390  Q
    |||| |||||||||||||||||    
T  7529519 aaatcccatttgttcccatctc 7529540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 19 - 182
Target Start/End: Complemental strand, 16349512 - 16349349
Alignment:
Q  19 atgattactggaacatcccaagctgattgtgctgttctgatcattgattccactaccggtggttttgaagccggtatttcaaaggatgggcagacccgtg 118  Q
    ||||||||||| ||||||||||||||||||||| |||| ||| ||||||||||| | | |||||||| |||||||||||| ||  |||| |||| |||||    
T  16349512 atgattactgggacatcccaagctgattgtgctcttcttatcgttgattccactcctgctggttttggagccggtatttccaataatggtcagatccgtg 16349413  T
Q  119 aacacgctcttcttgctttcactcttggtgtgaagcaaatgatttgttgctgcaacaaggtatt 182  Q
    |||| ||||| | ||||| | |||||||||| ||||||||||| || |||||||||||||||||    
T  16349412 aacatgctctccatgcttactctcttggtgtcaagcaaatgatctgctgctgcaacaaggtatt 16349349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 392
Target Start/End: Complemental strand, 16349233 - 16349144
Alignment:
Q  303 gtaggtatgaagaaattgtgaaggaagtttcatcctatttgaagaaggttggctataacccagacaaaattccatttgttcccatctctg 392  Q
    |||||| ||||||||||||||   || |||||||   ||||| ||| ||||||||||| | |||| || || ||||||||||||||||||    
T  16349233 gtaggtttgaagaaattgtgagtcaactttcatcaattttgatgaacgttggctataaacaagacgaagttacatttgttcccatctctg 16349144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 70 - 183
Target Start/End: Original strand, 4787429 - 4787536
Alignment:
Q  70 actaccggtggttttgaagccggtatttcaaaggatgggcagacccgtgaacacgctcttcttgctttcactcttggtgtgaagcaaatgatttgttgct 169  Q
    ||||| ||||||||||||||||||||      | |||| ||||||| |||||| ||||||||||| |||||| ||||||||||||||||||| || ||||    
T  4787429 actactggtggttttgaagccggtat------gaatggtcagacccttgaacatgctcttcttgccttcactgttggtgtgaagcaaatgatctgctgct 4787522  T
Q  170 gcaacaaggtattt 183  Q
    ||||||||||||||    
T  4787523 gcaacaaggtattt 4787536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 270 - 392
Target Start/End: Complemental strand, 1846608 - 1846486
Alignment:
Q  270 agatggatgccactacacctaagtactcgaagggtaggtatgaagaaattgtgaaggaagtttcatcctatttgaagaaggttggctataacccagacaa 369  Q
    ||||||||||||||||||| || ||||| |||| |||||||||| |||||||||   || ||||| ||| |||||   ||||||||||||||||||  ||    
T  1846608 agatggatgccactacacccaaatactccaaggataggtatgaacaaattgtgagtcaaatttcaccctttttgagcgaggttggctataacccaggtaa 1846509  T
Q  370 aattccatttgttcccatctctg 392  Q
    |||||| ||| | || |||||||    
T  1846508 aattccttttatccctatctctg 1846486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 25 - 220
Target Start/End: Complemental strand, 4297840 - 4297648
Alignment:
Q  25 actggaacatcccaagctgattgtgctgttctgatcattgattccactacc---ggtggttttgaagccggtatttcaaaggatgggcagacccgtgaac 121  Q
    |||||| | |||| |||| | |||| ||||||  ||||||||||||||||    ||||||||||||||||||||      |  ||| ||||||  |||||    
T  4297840 actggagcgtccctagctaactgtgatgttctcgtcattgattccactactactggtggttttgaagccggtat------gattggtcagacctttgaac 4297747  T
Q  122 acgctcttcttgctttcactcttggtgtgaagcaaatgatttgttgctgcaacaaggtatttgaacgttttagccctttgaaga-tgcatttgattattt 220  Q
    | ||||||||||| |||| |||||||| ||| ||||| || || ||||||||||||||||||| |  ||||||||| || |||| || ||||||||||||    
T  4297746 atgctcttcttgccttcaatcttggtgcgaatcaaattatctgctgctgcaacaaggtatttgta-tttttagcccgtttaagattgtatttgattattt 4297648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 270 - 392
Target Start/End: Complemental strand, 4619808 - 4619686
Alignment:
Q  270 agatggatgccactacacctaagtactcgaagggtaggtatgaagaaattgtgaaggaagtttcatcctatttgaagaaggttggctataacccagacaa 369  Q
    |||||||||||||| |||| || ||||| |||  ||||||||||||| ||||||| |   |||||  || |||| ||| | |||||||||||||  | ||    
T  4619808 agatggatgccactgcacccaaatactccaagtataggtatgaagaatttgtgaaaggtttttcacactttttggagaggattggctataaccctaaaaa 4619709  T
Q  370 aattccatttgttcccatctctg 392  Q
    |||| ||||||||||||||||||    
T  4619708 aattacatttgttcccatctctg 4619686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 268 - 391
Target Start/End: Complemental strand, 4297603 - 4297480
Alignment:
Q  268 acagatggatgccactacacctaagtactcgaagggtaggtatgaagaaattgtgaaggaagtttcatcctatttgaagaaggttggctataacccagac 367  Q
    ||||||||||||||||||||| || ||||| | || |||||||| | ||||     || |||||| | |||||||||  |||||||||||||| ||| |     
T  4297603 acagatggatgccactacacccaaatactccatggataggtatgtaaaaatatcagagcaagttttaacctatttgatcaaggttggctataagccatat 4297504  T
Q  368 aaaattccatttgttcccatctct 391  Q
     ||||||||||| |||||||||||    
T  4297503 gaaattccatttattcccatctct 4297480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 183
Target Start/End: Complemental strand, 4619959 - 4619893
Alignment:
Q  117 tgaacacgctcttcttgctttcactcttggtgtgaagcaaatgatttgttgctgcaacaaggtattt 183  Q
    |||||| ||| | |||||||| || |||||||||||||||||||| || |||| |||||||||||||    
T  4619959 tgaacatgctgtccttgctttaacccttggtgtgaagcaaatgatctgctgctacaacaaggtattt 4619893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 347 - 391
Target Start/End: Original strand, 4787648 - 4787692
Alignment:
Q  347 aaggttggctataacccagacaaaattccatttgttcccatctct 391  Q
    |||||||||||||||||| |  |||||||||||||||||||||||    
T  4787648 aaggttggctataacccaaatgaaattccatttgttcccatctct 4787692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 7e-22; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 34 - 183
Target Start/End: Complemental strand, 34691185 - 34691036
Alignment:
Q  34 tcccaagctgattgtgctgttctgatcattgattccactaccggtggttttgaagccggtatttcaaaggatgggcagacccgtgaacacgctcttcttg 133  Q
    ||||||||||| |||||||||||  |||||||||| |||||  | |||||   ||| |||   || ||| |||| |||||| | ||||| ||||||||||    
T  34691185 tcccaagctgactgtgctgttctcgtcattgattcgactactagaggtttgcgagctggttggtctaagaatggtcagacctgggaacatgctcttcttg 34691086  T
Q  134 ctttcactcttggtgtgaagcaaatgatttgttgctgcaacaaggtattt 183  Q
    | |||||||||||||||| ||||||||| || ||||||||||||||||||    
T  34691085 ccttcactcttggtgtgaggcaaatgatctgctgctgcaacaaggtattt 34691036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 34 - 183
Target Start/End: Complemental strand, 34713597 - 34713448
Alignment:
Q  34 tcccaagctgattgtgctgttctgatcattgattccactaccggtggttttgaagccggtatttcaaaggatgggcagacccgtgaacacgctcttcttg 133  Q
    ||||||||||| |||||||||||  |||||||||| |||||  | |||||   ||| |||   || ||| |||| |||||| | ||||| ||||||||||    
T  34713597 tcccaagctgactgtgctgttctcgtcattgattcgactactagaggtttgcgagctggttggtctaagaatggtcagacctgggaacatgctcttcttg 34713498  T
Q  134 ctttcactcttggtgtgaagcaaatgatttgttgctgcaacaaggtattt 183  Q
    | |||||||||||||||| ||||||||| || ||||||||||||||||||    
T  34713497 ccttcactcttggtgtgaggcaaatgatctgctgctgcaacaaggtattt 34713448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 269 - 392
Target Start/End: Complemental strand, 34690966 - 34690843
Alignment:
Q  269 cagatggatgccactacacctaagtactcgaagggtaggtatgaagaaattgtgaaggaagtttcatcctatttgaagaaggttggctataacccagaca 368  Q
    ||||||||||||| |||||| || ||||| |||| ||||||||||  ||||||||||| | ||||| ||  ||||| || | |||| |||||| |||| |    
T  34690966 cagatggatgccattacacccaaatactccaaggataggtatgaactaattgtgaagggaatttcacccgctttgatgaggattggttataacacagata 34690867  T
Q  369 aaattccatttgttcccatctctg 392  Q
    ||||||||||||||||||||||||    
T  34690866 aaattccatttgttcccatctctg 34690843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 269 - 392
Target Start/End: Complemental strand, 34713378 - 34713255
Alignment:
Q  269 cagatggatgccactacacctaagtactcgaagggtaggtatgaagaaattgtgaaggaagtttcatcctatttgaagaaggttggctataacccagaca 368  Q
    ||||||||||||| |||||| || ||||| |||| ||||||||||  ||||||||||| | ||||| ||  ||||| || | |||| |||||| |||| |    
T  34713378 cagatggatgccattacacccaaatactccaaggataggtatgaactaattgtgaagggaatttcacccgctttgatgaggattggttataacacagata 34713279  T
Q  369 aaattccatttgttcccatctctg 392  Q
    ||||||||||||||||||||||||    
T  34713278 aaattccatttgttcccatctctg 34713255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 19 - 183
Target Start/End: Complemental strand, 33861209 - 33861045
Alignment:
Q  19 atgattactggaacatcccaagctgattgtgctgttctgatcattgattccactaccggtggttttgaagccggtatttcaaaggatgggcagacccgtg 118  Q
    ||||||| ||| |||||| | |||||||| ||| |||| ||| |||||||| || | |||||||||||||  ||| |||| ||| |||| ||||||||||    
T  33861209 atgattaatgggacatcctatgctgattgcgctcttcttatcgttgattcctctcctggtggttttgaagttggtttttctaagcatggtcagacccgtg 33861110  T
Q  119 aacacgctcttcttgctttcactcttggtgtgaagcaaatgatttgttgctgcaacaaggtattt 183  Q
    |||| || ||||| || | |||||||||||||   |||||||| || |||  |||||||||||||    
T  33861109 aacatgcccttctcgcctgcactcttggtgtgcctcaaatgatctgctgcatcaacaaggtattt 33861045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 100 - 182
Target Start/End: Complemental strand, 16232462 - 16232380
Alignment:
Q  100 aaggatgggcagacccgtgaacacgctcttcttgctttcactcttggtgtgaagcaaatgatttgttgctgcaacaaggtatt 182  Q
    |||||||| |||||| | ||||| ||||| ||||| | |||||||||||||| ||||||||| || |||||||||||||||||    
T  16232462 aaggatggtcagacctgggaacatgctctacttgcgtacactcttggtgtgaggcaaatgatctgctgctgcaacaaggtatt 16232380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 268 - 392
Target Start/End: Complemental strand, 16232308 - 16232184
Alignment:
Q  268 acagatggatgccactacacctaagtactcgaagggtaggtatgaagaaattgtgaaggaagtttcatcctatttgaagaaggttggctataacccagac 367  Q
    ||||||| ||||||||||||| || ||||| ||||  || ||||||| ||||||||||| ||||||| ||  ||||| || | |||| |||||| | ||     
T  16232308 acagatgaatgccactacaccgaaatactccaaggacagatatgaagtaattgtgaagggagtttcacccgctttgacgaggattggttataacgctgat 16232209  T
Q  368 aaaattccatttgttcccatctctg 392  Q
     | ||||||||||||||||||||||    
T  16232208 gatattccatttgttcccatctctg 16232184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 351 - 392
Target Start/End: Complemental strand, 33860879 - 33860838
Alignment:
Q  351 ttggctataacccagacaaaattccatttgttcccatctctg 392  Q
    |||||||||||| ||||||| |||||||||||||||||||||    
T  33860879 ttggctataacctagacaaagttccatttgttcccatctctg 33860838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 340 - 392
Target Start/End: Original strand, 39242500 - 39242552
Alignment:
Q  340 tttgaagaaggttggctataacccagacaaaattccatttgttcccatctctg 392  Q
    |||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  39242500 tttgaagaaggttggctataacccagacaaaactcgatttgttcccatctctg 39242552  T

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