View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9843_5 (Length: 302)
Name: NF9843_5
Description: NF9843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9843_5 |
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Alignment Details
Target: chr7 (Bit Score: 136; Significance: 6e-71; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 40223730 - 40223894
Alignment:
| Q |
1 |
gatggtagaaggttttatctctccatgcaccgaacgtttcacgccatttgtagaatgtttcaaccacccttctttgaaaacaaggaccaaatattattaa |
100 |
Q |
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| T |
40223730 |
gatggtagaaggttttatctctccatgcaccgaacgtttcacgccatttgtagaatgcttcaaccacccttctttgaaaacaaggaccaaatattattaa |
40223829 |
T |
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| Q |
101 |
ttagtcagacatcaacccgaaccnnnnnnntacattaacttaaaaaatatagtaagtgctggtat |
165 |
Q |
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| T |
40223830 |
ttagtcagacatcaacccgaaccaaaaaaatacattaacttcaaaaatatagtaagtgctggtat |
40223894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 230 - 302
Target Start/End: Original strand, 40223959 - 40224031
Alignment:
| Q |
230 |
tgcacctaagtctaattagttgtatcgatttatccatatcctagttttatctaattcacacatataaagtttt |
302 |
Q |
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| T |
40223959 |
tgcacctaagtctaattagttgtatcgatttatcgatatcctagttttatctaattcacacatataaagtttt |
40224031 |
T |
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