View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9845_high_17 (Length: 248)
Name: NF9845_high_17
Description: NF9845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9845_high_17 |
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Alignment Details
Target: chr8 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 2151799 - 2151563
Alignment:
| Q |
1 |
tgtgaattatgtgactaaaacctagacttacaaactaataaccattacaaattnnnnnnnn------taaacatcaaacaataatttaccatgtgcatct |
94 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2151799 |
tgtgaattatgtgactaaaacctagactcacaaactaataaccattacaaattaaaaaaaaaaaaaataaacatcaaacaataatttaccatgtgcatct |
2151700 |
T |
|
| Q |
95 |
caatacnnnnnnnnn---tgtaatttataagcaagtaaataaacaacgatgggttgatagcttagtcacaaatgaagcatcacggtttgaaaagtagtag |
191 |
Q |
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|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2151699 |
caatacaaaaaaaaaaaatgtaatttataagccagtaaataaacaacgatgggttgatagcttagtcacaaatgaagcatcacggtttgaaaagtagtag |
2151600 |
T |
|
| Q |
192 |
aaattcacaaactatagacaagttcatgagtcaacaa |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
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| T |
2151599 |
aaattcacaaactatagacaagttcatgagtcaacaa |
2151563 |
T |
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