View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9845_high_19 (Length: 239)
Name: NF9845_high_19
Description: NF9845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9845_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 49289962 - 49289741
Alignment:
| Q |
1 |
aaataagtgcttgttcaatctctctccctcttggtatctcatcaagttcatatactgctggattcacaccaaagtcacaaaatagtgtctttattgtatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49289962 |
aaataagtgcttgttcaatctctctccctcttggtatctcatcaagttcatatactgctggattcacaccaaagtcacaaaatagtgtctttattgtatg |
49289863 |
T |
|
| Q |
101 |
actcatgcaacatgaactcttgctgaatatcaccactggcctttctgaaaccatctttgttactctctccatnnnnnnnnnnnnatgtcaaatgtggaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
49289862 |
actcatgcaacatgaactcttgctgaatatcaccactggcctttctgaaaccatctttgttactctctccat----tatatataatgtcaaatgtggaaa |
49289767 |
T |
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| Q |
201 |
atgttggttgatatgtgaggaatgtg |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
49289766 |
atgttggttgatatgtgaggaatgtg |
49289741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 49296913 - 49296692
Alignment:
| Q |
1 |
aaataagtgcttgttcaatctctctccctcttggtatctcatcaagttcatatactgctggattcacaccaaagtcacaaaatagtgtctttattgtatg |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49296913 |
aaataagtgcttgttcaatctctctccctcttggtatctcatcaagttcatatactgctggattcacaccaaagtcacaaaatagtgtctttattgtatg |
49296814 |
T |
|
| Q |
101 |
actcatgcaacatgaactcttgctgaatatcaccactggcctttctgaaaccatctttgttactctctccatnnnnnnnnnnnnatgtcaaatgtggaaa |
200 |
Q |
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| T |
49296813 |
actcatgcaacatgaactcttgctgaatatcaccactggcctttctgaaaccatctttgttactctctccat----tatatataatgtcaaatgtggaaa |
49296718 |
T |
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| Q |
201 |
atgttggttgatatgtgaggaatgtg |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
49296717 |
atgttggttgatatgtgaggaatgtg |
49296692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 49303643 - 49303422
Alignment:
| Q |
1 |
aaataagtgcttgttcaatctctctccctcttggtatctcatcaagttcatatactgctggattcacaccaaagtcacaaaatagtgtctttattgtatg |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49303643 |
aaataagtgcttgttcaatctctctccctcttggtatctcatcaagttcatatactgctggattcacaccaaagtcacaaaatagtgtctttattgtatg |
49303544 |
T |
|
| Q |
101 |
actcatgcaacatgaactcttgctgaatatcaccactggcctttctgaaaccatctttgttactctctccatnnnnnnnnnnnnatgtcaaatgtggaaa |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
49303543 |
actcatgcaacatgaactcttgctgaatatcaccactggcctttctgaaaccatctttgttactctctccat----tatatataatgtcaaatgtggaaa |
49303448 |
T |
|
| Q |
201 |
atgttggttgatatgtgaggaatgtg |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
49303447 |
atgttggttgatatgtgaggaatgtg |
49303422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 5 - 148
Target Start/End: Original strand, 6567970 - 6568113
Alignment:
| Q |
5 |
aagtgcttgttcaatctctctccctcttggtatctcatcaagttcatatactgctggattcacaccaaagtcacaaaatagtgtctttattgtatgactc |
104 |
Q |
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||||||||||||||| |||||||||| |||||||||||||||| ||| |||||||||| |||||||||| || || || || ||||| |||| | |
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| T |
6567970 |
aagtgcttgttcaatgtctctccctccactcatctcatcaagttcatgaacttctggattcactccaaagtcactgaagagggttttgattgtgtgacac |
6568069 |
T |
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| Q |
105 |
atgcaacatgaactcttgctgaatatcaccactggcctttctga |
148 |
Q |
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|||||||| ||||||||||||||||||||||| ||| ||||| |
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| T |
6568070 |
atgcaacaactactcttgctgaatatcaccactgacctctctga |
6568113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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