View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9845_high_2 (Length: 521)
Name: NF9845_high_2
Description: NF9845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9845_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-153; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 157 - 506
Target Start/End: Original strand, 8495617 - 8495972
Alignment:
| Q |
157 |
ttccttattcaaatggacaaaatttacacaataaattttgtacttgtatttgtaataatccaaaaataaaaatccaatgcatatattctttgactatgac |
256 |
Q |
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| T |
8495617 |
ttccttattcaaatggacaaaatttacacaataaattttgtacttgtatttgtaataatccaaaaataaaaatccaatgcatatattctttgactatgac |
8495716 |
T |
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| Q |
257 |
gacgttataatatgatttgttatttgttttttgtaataaagatggagccacaggagcgtttaaacagtgaccacacacgctcacatttggccaccccgct |
356 |
Q |
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| T |
8495717 |
gacgttataatatgatttgttatttgttttttgtaataaaggtggagccacaggagcgtttaaacagtgaccacacacgctcacatttggccaccccgct |
8495816 |
T |
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| Q |
357 |
cnnnnnnnnnnnnnnnnnntcagttataactattaattaacacttcaaattcaaattcattcttggaactttcatacagccata------tctcattctc |
450 |
Q |
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| T |
8495817 |
cctctctctctctctctcttcagttataactattaattaacacttcaaattcaaattcattcttggaactttcatacagccatatctcattctcattctc |
8495916 |
T |
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| Q |
451 |
attctgctcttcttcattccatcactcacttccttctggtatgttatatttttcat |
506 |
Q |
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| T |
8495917 |
attctgctcttcttcattccatcactcacttccttctggtatgttatatttttcat |
8495972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 8 - 102
Target Start/End: Original strand, 8495468 - 8495562
Alignment:
| Q |
8 |
tagcataggaacaaaacaacccagtctttataaccattcaaattcacacatatagtgtgaaaatgctcaccaattaaacgacaacaattaatgtg |
102 |
Q |
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| T |
8495468 |
tagcaaaggaacaaaacaacccagtctttataaccattcaaattcacacatatagtgtgaaaatgctcaccaattaaacgacaacaattaatgtg |
8495562 |
T |
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