View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9845_high_3 (Length: 477)

Name: NF9845_high_3
Description: NF9845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9845_high_3
NF9845_high_3
[»] chr8 (12 HSPs)
chr8 (162-477)||(12930333-12930648)
chr8 (162-477)||(12935079-12935394)
chr8 (17-161)||(1788818-1788957)
chr8 (105-161)||(17028414-17028470)
chr8 (105-161)||(17558850-17558906)
chr8 (109-161)||(21185327-21185379)
chr8 (105-161)||(39655701-39655757)
chr8 (105-161)||(31183760-31183816)
chr8 (105-141)||(38676893-38676929)
chr8 (105-139)||(17088772-17088806)
chr8 (105-161)||(38678744-38678799)
chr8 (195-249)||(34858134-34858188)
[»] chr4 (10 HSPs)
chr4 (162-471)||(11104128-11104438)
chr4 (17-161)||(6667638-6667777)
chr4 (17-148)||(6671310-6671436)
chr4 (105-161)||(13010535-13010591)
chr4 (105-161)||(20058105-20058161)
chr4 (105-161)||(895502-895558)
chr4 (105-161)||(44643512-44643567)
chr4 (157-219)||(28612227-28612291)
chr4 (162-219)||(28607465-28607524)
chr4 (105-162)||(43287907-43287964)
[»] chr7 (14 HSPs)
chr7 (186-449)||(12081699-12081961)
chr7 (186-378)||(12098715-12098892)
chr7 (17-161)||(31209994-31210133)
chr7 (105-161)||(22301153-22301209)
chr7 (17-161)||(31206558-31206684)
chr7 (105-161)||(11674060-11674116)
chr7 (105-161)||(3850541-3850597)
chr7 (105-161)||(39426453-39426509)
chr7 (351-400)||(2757571-2757620)
chr7 (351-400)||(2762122-2762171)
chr7 (105-162)||(13815797-13815853)
chr7 (106-161)||(32352432-32352486)
chr7 (412-449)||(12098911-12098948)
chr7 (105-161)||(15569626-15569681)
[»] scaffold0007 (1 HSPs)
scaffold0007 (34-105)||(26241-26312)
[»] chr1 (11 HSPs)
chr1 (105-162)||(9111543-9111600)
chr1 (105-161)||(12141654-12141710)
chr1 (105-161)||(24981164-24981220)
chr1 (417-477)||(34907051-34907111)
chr1 (105-161)||(47580456-47580512)
chr1 (161-219)||(34906752-34906812)
chr1 (105-161)||(4242571-4242627)
chr1 (105-161)||(43254175-43254230)
chr1 (105-162)||(38828689-38828746)
chr1 (105-142)||(51465563-51465600)
chr1 (105-161)||(38825479-38825535)
[»] chr2 (10 HSPs)
chr2 (105-161)||(18739113-18739169)
chr2 (105-161)||(21189461-21189517)
chr2 (16-103)||(8424575-8424662)
chr2 (105-161)||(2590560-2590616)
chr2 (105-161)||(35969279-35969335)
chr2 (105-150)||(14433601-14433646)
chr2 (17-93)||(1043480-1043557)
chr2 (121-161)||(1043204-1043244)
chr2 (105-161)||(10941428-10941482)
chr2 (105-161)||(10947297-10947351)
[»] scaffold0028 (2 HSPs)
scaffold0028 (105-161)||(110180-110236)
scaffold0028 (105-149)||(127771-127815)
[»] scaffold0014 (1 HSPs)
scaffold0014 (105-161)||(82681-82737)
[»] chr6 (8 HSPs)
chr6 (105-161)||(6591851-6591907)
chr6 (105-161)||(19697847-19697903)
chr6 (24-106)||(3835586-3835668)
chr6 (110-161)||(15518076-15518127)
chr6 (161-219)||(2308756-2308816)
chr6 (105-161)||(24044935-24044990)
chr6 (105-159)||(19973730-19973783)
chr6 (105-162)||(2936150-2936206)
[»] scaffold0076 (1 HSPs)
scaffold0076 (105-161)||(6762-6818)
[»] chr5 (5 HSPs)
chr5 (105-160)||(18594875-18594930)
chr5 (109-161)||(26703023-26703075)
chr5 (109-161)||(26972756-26972808)
chr5 (105-161)||(39292158-39292214)
chr5 (17-86)||(31307327-31307397)
[»] scaffold0293 (1 HSPs)
scaffold0293 (16-100)||(4843-4927)
[»] chr3 (3 HSPs)
chr3 (105-161)||(19930038-19930093)
chr3 (105-161)||(42253564-42253619)
chr3 (105-160)||(19935237-19935291)


Alignment Details
Target: chr8 (Bit Score: 284; Significance: 1e-159; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 162 - 477
Target Start/End: Original strand, 12930333 - 12930648
Alignment:
Q  162 tgttggccccaccacgtgtgggttatgtccagccaaagacaattgctacaagcaattgccaaagtttcaactatgcagtaaatgcatgttgtaaaatctt 261  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  12930333 tgttggccccaccacgtgtgggttatgtccagccaaagacaattgctacaagcaattgccaaagtttcaactatgcagtaaatgtatgatgtaaaatctt 12930432  T
Q  262 cttctacagtgaggctatgttgtagcttgcggtgctgatatctttgaaaagtaaatgtgatgcagatttcacatttggcttgcagtatcatttgacaaag 361  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  12930433 cttctacagtgaggctatgttgtagcttgcggtgctgatatctttgaaaagtaaatgtgatgcagatttcacatttggcttgtagtatcatttgacaaag 12930532  T
Q  362 gagaattgaattcacatagccacatttcatgtataaatagaggccttggcatgtgaagaaaattatctgaagctcaaagaaaatacaagcttcatcaatg 461  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||  | ||    
T  12930533 gagaattgaattcacatagccacatttcatgtataaatagaggccttggcatgtgaagaaaatcatccgaagctcaaagaaaatacaagcttcagtattg 12930632  T
Q  462 aagcagaagtgaaaat 477  Q
    ||||||||||||||||    
T  12930633 aagcagaagtgaaaat 12930648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 162 - 477
Target Start/End: Original strand, 12935079 - 12935394
Alignment:
Q  162 tgttggccccaccacgtgtgggttatgtccagccaaagacaattgctacaagcaattgccaaagtttcaactatgcagtaaatgcatgttgtaaaatctt 261  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  12935079 tgttggccccaccacgtgtgggttatgtccagccaaagacaattgctacaagcaattgccaaagtttcaactatgcagtaaatgtatgatgtaaaatctt 12935178  T
Q  262 cttctacagtgaggctatgttgtagcttgcggtgctgatatctttgaaaagtaaatgtgatgcagatttcacatttggcttgcagtatcatttgacaaag 361  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  12935179 cttctatagtgaggctatgttgtagcttgcggtgctgatatctttgaaaactaaatgtgatgcagatttcacatttggcttgcagtatcatttgacaaag 12935278  T
Q  362 gagaattgaattcacatagccacatttcatgtataaatagaggccttggcatgtgaagaaaattatctgaagctcaaagaaaatacaagcttcatcaatg 461  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||  | ||    
T  12935279 gagaattgaattcacatagccacatttcatgtataaatagaggccttggcatgtgaagaaaatcatccgaagctcaaagaaaatacaagcttcagtattg 12935378  T
Q  462 aagcagaagtgaaaat 477  Q
    ||||||||||||||||    
T  12935379 aagcagaagtgaaaat 12935394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 17 - 161
Target Start/End: Original strand, 1788818 - 1788957
Alignment:
Q  17 atttgatgtcggcaaactcgaagtaaacaaacacgaaatcatgaaagtgataacctgccaagaaataaaccattacataaacctgaggtgaggcgtgaca 116  Q
    |||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||||||||     ||||||||||||    
T  1788818 atttgatgtcggcaaaattgaagtaaacaaacacgaaaccatgaaagtgataacctgccaaaaagtaaaccattacataaacc-----tgaggcgtgaca 1788912  T
Q  117 tagtcactgtccttgaggattttatccgcctcattagcgcatatc 161  Q
    |||||||||||||||||||||||||||||||||| ||||||||||    
T  1788913 tagtcactgtccttgaggattttatccgcctcataagcgcatatc 1788957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 105 - 161
Target Start/End: Complemental strand, 17028470 - 17028414
Alignment:
Q  105 tgaggcgtgacatagtcactgtccttgaggattttatccgcctcattagcgcatatc 161  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  17028470 tgaggcgtgacacagtcactgtccttgaggattttatccgcctcattagcgcatatc 17028414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 105 - 161
Target Start/End: Complemental strand, 17558906 - 17558850
Alignment:
Q  105 tgaggcgtgacatagtcactgtccttgaggattttatccgcctcattagcgcatatc 161  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  17558906 tgaggcgtgacacagtcactgtccttgaggattttatccgcctcattagcgcatatc 17558850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 109 - 161
Target Start/End: Original strand, 21185327 - 21185379
Alignment:
Q  109 gcgtgacatagtcactgtccttgaggattttatccgcctcattagcgcatatc 161  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  21185327 gcgtgacatagtcactgtccttgaggattttatccgcctcataagcgcatatc 21185379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 105 - 161
Target Start/End: Original strand, 39655701 - 39655757
Alignment:
Q  105 tgaggcgtgacatagtcactgtccttgaggattttatccgcctcattagcgcatatc 161  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  39655701 tgaggcgtgacatagtcactgtccttgaggattttatccgcctcataagtgcatatc 39655757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 105 - 161
Target Start/End: Complemental strand, 31183816 - 31183760
Alignment:
Q  105 tgaggcgtgacatagtcactgtccttgaggattttatccgcctcattagcgcatatc 161  Q
    |||||||||||||| |||||||  ||||| ||||||||| |||||||||||||||||    
T  31183816 tgaggcgtgacataatcactgttattgagtattttatccacctcattagcgcatatc 31183760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 105 - 141
Target Start/End: Complemental strand, 38676929 - 38676893
Alignment:
Q  105 tgaggcgtgacatagtcactgtccttgaggattttat 141  Q
    |||||||||||||||||||||||||||||||||||||    
T  38676929 tgaggcgtgacatagtcactgtccttgaggattttat 38676893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 105 - 139
Target Start/End: Original strand, 17088772 - 17088806
Alignment:
Q  105 tgaggcgtgacatagtcactgtccttgaggatttt 139  Q
    |||||||||||||||||||||||||||||||||||    
T  17088772 tgaggcgtgacatagtcactgtccttgaggatttt 17088806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 105 - 161
Target Start/End: Complemental strand, 38678799 - 38678744
Alignment:
Q  105 tgaggcgtgacatagtcactgtccttgaggattttatccgcctcattagcgcatatc 161  Q
    |||||||||||||||||| |||| |||||||||| ||||| ||||| ||||||||||    
T  38678799 tgaggcgtgacatagtca-tgtctttgaggatttgatccgtctcataagcgcatatc 38678744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 195 - 249
Target Start/End: Original strand, 34858134 - 34858188
Alignment:
Q  195 caaagacaattgctacaagcaattgccaaagtttcaactatgcagtaaatgcatg 249  Q
    ||||||||||||| ||||| || |||||||||||| || ||||| ||||||||||    
T  34858134 caaagacaattgcaacaaggaactgccaaagtttctacaatgcattaaatgcatg 34858188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 162 - 471
Target Start/End: Original strand, 11104128 - 11104438
Alignment:
Q  162 tgttggccccaccacgtgtgggttatgtccagccaaagacaattgctacaagcaattgccaaagtttcaactatgcagtaaatgcatgttgtaaaatctt 261  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  11104128 tgttggccccatcacgtgtgggttatgtccagccaaagacaattgctacaagcaattgccaaagtttcaactatgcagtaaatgcatgatgtaaaatctt 11104227  T
Q  262 cttctacagtgaggctatgttgtagcttgcggtgctgatatctttgaaaagtaaatgtgatgcagatttcacatttggcttgcagtatcatttgacaaag 361  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  11104228 cttctacagtgaggctatgttgtagcttgcggtgctgatatctttgaaaattaaatgtcatgcagatttcacatttggcttgctgtatcatttgacaaag 11104327  T
Q  362 gagaattgaattcacatagccacatttcatgtataaatagaggccttggcatgtgaagaaaattatctgaagctcaaagaaaatac-aagcttcatcaat 460  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |  ||||||||||||||||| |||||||| || |    
T  11104328 gagaattgaattcacatagccacatttcatgtataaatataggccttggcatgtgaagaaaatcaaccaaagctcaaagaaaatacaaagcttcaacatt 11104427  T
Q  461 gaagcagaagt 471  Q
    |||||||||||    
T  11104428 gaagcagaagt 11104438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 17 - 161
Target Start/End: Original strand, 6667638 - 6667777
Alignment:
Q  17 atttgatgtcggcaaactcgaagtaaacaaacacgaaatcatgaaagtgataacctgccaagaaataaaccattacataaacctgaggtgaggcgtgaca 116  Q
    |||||||||||||||| ||||| |||||||||||||||  |||||||||||||||| ||||||||||||||||||||||||||     ||||||||||||    
T  6667638 atttgatgtcggcaaattcgaattaaacaaacacgaaactatgaaagtgataacctaccaagaaataaaccattacataaacc-----tgaggcgtgaca 6667732  T
Q  117 tagtcactgtccttgaggattttatccgcctcattagcgcatatc 161  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||    
T  6667733 tagtcactgttcttgaggattttatccgcctcataagcgcatatc 6667777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 17 - 148
Target Start/End: Original strand, 6671310 - 6671436
Alignment:
Q  17 atttgatgtcggcaaactcgaagtaaacaaacacgaaatcatgaaagtgataacctgccaagaaataaaccattacataaacctgaggtgaggcgtgaca 116  Q
    |||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||     ||||||||||||    
T  6671310 atttgatgtcggcaaattcgaattaaacaaacacgaaaccatgaaagtgataacctaccaagaaataaaccattacataaacc-----tgaggcgtgaca 6671404  T
Q  117 tagtcactgtccttgaggattttatccgcctc 148  Q
    ||||||| ||||||||||||||||||||||||    
T  6671405 tagtcaccgtccttgaggattttatccgcctc 6671436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 105 - 161
Target Start/End: Original strand, 13010535 - 13010591
Alignment:
Q  105 tgaggcgtgacatagtcactgtccttgaggattttatccgcctcattagcgcatatc 161  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  13010535 tgaggcgtgacatagtcactgtccttgaggattttatccgcctcataagcgcatatc 13010591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 105 - 161
Target Start/End: Original strand, 20058105 - 20058161
Alignment:
Q  105 tgaggcgtgacatagtcactgtccttgaggattttatccgcctcattagcgcatatc 161  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  20058105 tgaggcgtgacatagtcactgtccttgaggattttatccgcctcattagcgcgtatc 20058161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 105 - 161
Target Start/End: Complemental strand, 895558 - 895502
Alignment:
Q  105 tgaggcgtgacatagtcactgtccttgaggattttatccgcctcattagcgcatatc 161  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  895558 tgagtcgtgacatagtcactgtccttgaggattttatccgcctcataagcgcatatc 895502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 105 - 161
Target Start/End: Complemental strand, 44643567 - 44643512
Alignment:
Q  105 tgaggcgtgacatagtcactgtccttgaggattttatccgcctcattagcgcatatc 161  Q
    |||||||||||||||||||||||||| | |||| |||||||||||| ||||||||||    
T  44643567 tgaggcgtgacatagtcactgtccttca-gattctatccgcctcataagcgcatatc 44643512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 157 - 219
Target Start/End: Complemental strand, 28612291 - 28612227
Alignment:
Q  157 atatctgttggccccaccacgtgtggg--ttatgtccagccaaagacaattgctacaagcaattg 219  Q
    |||| ||||||||||||||||||||||  || | ||||||||||||||||| ||||||| |||||    
T  28612291 atatatgttggccccaccacgtgtgggtattgtttccagccaaagacaattactacaagtaattg 28612227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 162 - 219
Target Start/End: Complemental strand, 28607524 - 28607465
Alignment:
Q  162 tgttggccccaccacgtgtgggttatgt--ccagccaaagacaattgctacaagcaattg 219  Q
    |||||||||||||||||||||||  |||  |||||||||||||||| ||||||| |||||    
T  28607524 tgttggccccaccacgtgtgggtattgtttccagccaaagacaattactacaagtaattg 28607465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 162
Target Start/End: Complemental strand, 43287964 - 43287907
Alignment:
Q  105 tgaggcgtgacatagtcactgtccttgaggattttatccgcctcattagcgcatatct 162  Q
    |||||||||||| ||||||||||||| | |  ||||| |||||||| |||||||||||    
T  43287964 tgaggcgtgacaaagtcactgtccttaaaggatttattcgcctcataagcgcatatct 43287907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 176; Significance: 1e-94; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 186 - 449
Target Start/End: Original strand, 12081699 - 12081961
Alignment:
Q  186 atgtccagccaaagacaattgctacaagcaattgccaaagtttcaactatgcagtaaatgcatgttgtaaaatcttcttctacagtgaggctatgttgta 285  Q
    ||||| ||||||||||||||| ||||  ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||| ||||    
T  12081699 atgtctagccaaagacaattgatacagccaattgccaaagtttcaactatgcattaaatgcatgatgtaaaatcttcttctacagcgaggctatgctgta 12081798  T
Q  286 gcttgcggtgctgatatctttgaaaagtaaatgtgatgcagatttcacatttggcttgcagtatcatttgacaaaggagaattgaattcacatagccaca 385  Q
    |||||||| | |||||||||||||||| ||||||||||||||||||||||||| ||||||  |||||||||||||||||||||||||||| ||  |||||    
T  12081799 gcttgcgg-gttgatatctttgaaaagcaaatgtgatgcagatttcacatttgccttgcaagatcatttgacaaaggagaattgaattcagattaccaca 12081897  T
Q  386 tttcatgtataaatagaggccttggcatgtgaagaaaattatctgaagctcaaagaaaatacaa 449  Q
    |||||| |||||||||| |||||||||||||||||||||||||  |||||||||||||||||||    
T  12081898 tttcatatataaatagaagccttggcatgtgaagaaaattatccaaagctcaaagaaaatacaa 12081961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 186 - 378
Target Start/End: Original strand, 12098715 - 12098892
Alignment:
Q  186 atgtccagccaaagacaattgctacaagcaattgccaaagtttcaactatgcagtaaatgcatgttgtaaaatcttcttctacagtgaggctatgttgta 285  Q
    ||||| ||||||||||||||   |||||||||||||||||||||| |||||||         || |||||||||||   |||||||||||||||||||||    
T  12098715 atgtctagccaaagacaatt---acaagcaattgccaaagtttcagctatgca---------tgatgtaaaatctt---ctacagtgaggctatgttgta 12098799  T
Q  286 gcttgcggtgctgatatctttgaaaagtaaatgtgatgcagatttcacatttggcttgcagtatcatttgacaaaggagaattgaattcacat 378  Q
    || || |||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  12098800 gcatgtggtgttgatatttttgaaaagtaaatgtgatgcatatttcacatttggcttgcagtatcatttgataaaagagaattgaattcacat 12098892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 17 - 161
Target Start/End: Original strand, 31209994 - 31210133
Alignment:
Q  17 atttgatgtcggcaaactcgaagtaaacaaacacgaaatcatgaaagtgataacctgccaagaaataaaccattacataaacctgaggtgaggcgtgaca 116  Q
    |||||||||| | ||| ||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||     ||||||||||||    
T  31209994 atttgatgtcaggaaaatcgaagtaaacaaacacaaaaccatgaaagtgataacctgccaagaagtaaaccattacataaacc-----tgaggcgtgaca 31210088  T
Q  117 tagtcactgtccttgaggattttatccgcctcattagcgcatatc 161  Q
    |||||||||||||||||||||||||||||||||| || |||||||    
T  31210089 tagtcactgtccttgaggattttatccgcctcataagtgcatatc 31210133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 105 - 161
Target Start/End: Original strand, 22301153 - 22301209
Alignment:
Q  105 tgaggcgtgacatagtcactgtccttgaggattttatccgcctcattagcgcatatc 161  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  22301153 tgaggcgtgacatagtcactgtccttgaggattttatccgcctcataagcgcatatc 22301209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 17 - 161
Target Start/End: Original strand, 31206558 - 31206684
Alignment:
Q  17 atttgatgtcggcaaactcgaagtaaacaaacacgaaatcatgaaagtgataacctgccaagaaataaaccattacataaacctgaggtgaggcgtgaca 116  Q
    |||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||| || ||| |                  ||||||||||||    
T  31206558 atttgatgtcggcaaaatcgaagtaaacaaacacgaaaccatgaaagtgataacttgccaaaaagtaacc------------------tgaggcgtgaca 31206639  T
Q  117 tagtcactgtccttgaggattttatccgcctcattagcgcatatc 161  Q
    ||||||||||| ||||||||||||||| |||||| ||||||||||    
T  31206640 tagtcactgtctttgaggattttatccacctcataagcgcatatc 31206684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 105 - 161
Target Start/End: Complemental strand, 11674116 - 11674060
Alignment:
Q  105 tgaggcgtgacatagtcactgtccttgaggattttatccgcctcattagcgcatatc 161  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  11674116 tgaggtgtgacatagtcactgtccttgaggattttatccgcctcataagcgcatatc 11674060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 105 - 161
Target Start/End: Original strand, 3850541 - 3850597
Alignment:
Q  105 tgaggcgtgacatagtcactgtccttgaggattttatccgcctcattagcgcatatc 161  Q
    |||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||    
T  3850541 tgaggcgtgacatagtcactgtccttgatgattttatacgcctcataagcgcatatc 3850597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 105 - 161
Target Start/End: Original strand, 39426453 - 39426509
Alignment:
Q  105 tgaggcgtgacatagtcactgtccttgaggattttatccgcctcattagcgcatatc 161  Q
    |||||||||| ||||||||||||||||||||||||||||| ||||| |||| |||||    
T  39426453 tgaggcgtgatatagtcactgtccttgaggattttatccgtctcataagcgaatatc 39426509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 351 - 400
Target Start/End: Complemental strand, 2757620 - 2757571
Alignment:
Q  351 atttgacaaaggagaattgaattcacatagccacatttcatgtataaata 400  Q
    ||||||||||| || ||||||||||||| |||||||||||| ||||||||    
T  2757620 atttgacaaagaagcattgaattcacattgccacatttcatttataaata 2757571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 351 - 400
Target Start/End: Complemental strand, 2762171 - 2762122
Alignment:
Q  351 atttgacaaaggagaattgaattcacatagccacatttcatgtataaata 400  Q
    ||||||||||| || ||||||||||||| |||||||||||| ||||||||    
T  2762171 atttgacaaagaagcattgaattcacattgccacatttcatttataaata 2762122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 105 - 162
Target Start/End: Complemental strand, 13815853 - 13815797
Alignment:
Q  105 tgaggcgtgacatagtcactgtccttgaggattttatccgcctcattagcgcatatct 162  Q
    |||||||||||| ||||||||||||| |||| ||||| |||||||| |||||||||||    
T  13815853 tgaggcgtgacaaagtcactgtccttaagga-tttattcgcctcataagcgcatatct 13815797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 106 - 161
Target Start/End: Original strand, 32352432 - 32352486
Alignment:
Q  106 gaggcgtgacatagtcactgtccttgaggattttatccgcctcattagcgcatatc 161  Q
    ||||||||||| ||||||||||||| |||| ||||| |||||||| ||||||||||    
T  32352432 gaggcgtgacaaagtcactgtccttaagga-tttattcgcctcataagcgcatatc 32352486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 449
Target Start/End: Original strand, 12098911 - 12098948
Alignment:
Q  412 atgtgaagaaaattatctgaagctcaaagaaaatacaa 449  Q
    ||||||||||||| ||| ||||||||||||||||||||    
T  12098911 atgtgaagaaaataatccgaagctcaaagaaaatacaa 12098948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 105 - 161
Target Start/End: Complemental strand, 15569681 - 15569626
Alignment:
Q  105 tgaggcgtgacatagtcactgtccttgaggattttatccgcctcattagcgcatatc 161  Q
    |||||||||||| ||||||||||||| |||  |||||||||||||| ||| ||||||    
T  15569681 tgaggcgtgacaaagtcactgtcctt-agggatttatccgcctcataagcacatatc 15569626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 34 - 105
Target Start/End: Original strand, 26241 - 26312
Alignment:
Q  34 tcgaagtaaacaaacacgaaatcatgaaagtgataacctgccaagaaataaaccattacataaacctgaggt 105  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  26241 tcgaagtaaacaaatacgaaaccatgaaagtgataacctgccaagaagtaaaccattacataaacctgaggt 26312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 8e-22; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 105 - 162
Target Start/End: Original strand, 9111543 - 9111600
Alignment:
Q  105 tgaggcgtgacatagtcactgtccttgaggattttatccgcctcattagcgcatatct 162  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  9111543 tgaggcgtgacatagtcactgtccttgaggattttatccgcctcataagcgcatatct 9111600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 105 - 161
Target Start/End: Original strand, 12141654 - 12141710
Alignment:
Q  105 tgaggcgtgacatagtcactgtccttgaggattttatccgcctcattagcgcatatc 161  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  12141654 tgaggcgtgacatagtcactgtccttgaggattttatccgcctcataagcgcatatc 12141710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 105 - 161
Target Start/End: Original strand, 24981164 - 24981220
Alignment:
Q  105 tgaggcgtgacatagtcactgtccttgaggattttatccgcctcattagcgcatatc 161  Q
    ||||||||||||||||||  |||||||||||||||||||||||||| ||| ||||||    
T  24981164 tgaggcgtgacatagtcagcgtccttgaggattttatccgcctcataagcacatatc 24981220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 417 - 477
Target Start/End: Original strand, 34907051 - 34907111
Alignment:
Q  417 aagaaaattatctgaagctcaaagaaaatacaagcttcatcaatgaagcagaagtgaaaat 477  Q
    |||||||| ||| ||||||||||||||||||||||||||  | ||||||||||||||||||    
T  34907051 aagaaaatcatccgaagctcaaagaaaatacaagcttcagtattgaagcagaagtgaaaat 34907111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 105 - 161
Target Start/End: Complemental strand, 47580512 - 47580456
Alignment:
Q  105 tgaggcgtgacatagtcactgtccttgaggattttatccgcctcattagcgcatatc 161  Q
    |||||||||||||||||| ||||||||| ||||||||| ||||||| |||| |||||    
T  47580512 tgaggcgtgacatagtcaatgtccttgaagattttatctgcctcataagcgaatatc 47580456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 161 - 219
Target Start/End: Original strand, 34906752 - 34906812
Alignment:
Q  161 ctgttggccccaccacgtgtggg--ttatgtccagccaaagacaattgctacaagcaattg 219  Q
    |||||||||||||||||||||||  || | ||||||||||||||||| ||||||| |||||    
T  34906752 ctgttggccccaccacgtgtgggtattgtttccagccaaagacaattactacaagtaattg 34906812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 105 - 161
Target Start/End: Original strand, 4242571 - 4242627
Alignment:
Q  105 tgaggcgtgacatagtcactgtccttgaggattttatccgcctcattagcgcatatc 161  Q
    |||| ||||||||| ||  ||||||||||||||||||||| ||||| ||||||||||    
T  4242571 tgagacgtgacataatcgttgtccttgaggattttatccgactcatgagcgcatatc 4242627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 105 - 161
Target Start/End: Complemental strand, 43254230 - 43254175
Alignment:
Q  105 tgaggcgtgacatagtcactgtccttgaggattttatccgcctcattagcgcatatc 161  Q
    |||||||||||| ||||||||||||| |||| ||||| |||||||| ||||||||||    
T  43254230 tgaggcgtgacaaagtcactgtccttaagga-tttattcgcctcataagcgcatatc 43254175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 162
Target Start/End: Original strand, 38828689 - 38828746
Alignment:
Q  105 tgaggcgtgacatagtcactgtccttgaggattttatccgcctcattagcgcatatct 162  Q
    |||||||||||  ||||||| ||||| |||||||||||||||| || ||| |||||||    
T  38828689 tgaggcgtgacgaagtcactatccttaaggattttatccgccttataagctcatatct 38828746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 142
Target Start/End: Complemental strand, 51465600 - 51465563
Alignment:
Q  105 tgaggcgtgacatagtcactgtccttgaggattttatc 142  Q
    |||||||||||||||||||||||||||  |||||||||    
T  51465600 tgaggcgtgacatagtcactgtccttggagattttatc 51465563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 105 - 161
Target Start/End: Original strand, 38825479 - 38825535
Alignment:
Q  105 tgaggcgtgacatagtcactgtccttgaggattttatccgcctcattagcgcatatc 161  Q
    ||||| |||||  ||||||||||||| |||||||||||| |||||| | ||||||||    
T  38825479 tgaggtgtgacgaagtcactgtccttaaggattttatcctcctcataaacgcatatc 38825535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 105 - 161
Target Start/End: Original strand, 18739113 - 18739169
Alignment:
Q  105 tgaggcgtgacatagtcactgtccttgaggattttatccgcctcattagcgcatatc 161  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  18739113 tgaggcgtgacatagtcactgtccttgaggattttatccgcctcataagcgcatatc 18739169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 105 - 161
Target Start/End: Complemental strand, 21189517 - 21189461
Alignment:
Q  105 tgaggcgtgacatagtcactgtccttgaggattttatccgcctcattagcgcatatc 161  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  21189517 tgaggcgtgacatagtcactgtccttgaggattttatccgcctcataagcgcatatc 21189461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 16 - 103
Target Start/End: Complemental strand, 8424662 - 8424575
Alignment:
Q  16 aatttgatgtcggcaaactcgaagtaaacaaacacgaaatcatgaaagtgataacctgccaagaaataaaccattacataaacctgag 103  Q
    |||||||| |||||||| || |||||||||||||| ||| ||||||||||||||||||| ||  | ||||||||||||||||||||||    
T  8424662 aatttgatctcggcaaaatcaaagtaaacaaacactaaaccatgaaagtgataacctgcaaaacagtaaaccattacataaacctgag 8424575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 105 - 161
Target Start/End: Complemental strand, 2590616 - 2590560
Alignment:
Q  105 tgaggcgtgacatagtcactgtccttgaggattttatccgcctcattagcgcatatc 161  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  2590616 tgaggcgtgacatagtcactgtccttgaggattttattcgcctcataagcgcatatc 2590560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 105 - 161
Target Start/End: Original strand, 35969279 - 35969335
Alignment:
Q  105 tgaggcgtgacatagtcactgtccttgaggattttatccgcctcattagcgcatatc 161  Q
    |||||||||||||||||||||||||||| ||||||||||||||||  ||||||||||    
T  35969279 tgaggcgtgacatagtcactgtccttgaagattttatccgcctcaaaagcgcatatc 35969335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 105 - 150
Target Start/End: Original strand, 14433601 - 14433646
Alignment:
Q  105 tgaggcgtgacatagtcactgtccttgaggattttatccgcctcat 150  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  14433601 tgaggcgtgacatagtcactgtccttgtggattttatccgcctcat 14433646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 93
Target Start/End: Complemental strand, 1043557 - 1043480
Alignment:
Q  17 atttgatgtcggcaaactcgaagtaaacaaacacgaaatcatgaaagtgataacctgccaaga-aataaaccattaca 93  Q
    |||||||||| ||||| | |||||||||||||||| || | |||| ||||||||||||||||| | ||||||||||||    
T  1043557 atttgatgtcagcaaaattgaagtaaacaaacacggaaccgtgaaggtgataacctgccaagagagtaaaccattaca 1043480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 121 - 161
Target Start/End: Complemental strand, 1043244 - 1043204
Alignment:
Q  121 cactgtccttgaggattttatccgcctcattagcgcatatc 161  Q
    |||||||||||||||||||||||| |||||  |||||||||    
T  1043244 cactgtccttgaggattttatccgtctcataggcgcatatc 1043204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 105 - 161
Target Start/End: Original strand, 10941428 - 10941482
Alignment:
Q  105 tgaggcgtgacatagtcactgtccttgaggattttatccgcctcattagcgcatatc 161  Q
    |||||||||||| ||||||||||||| |||| ||||| |||||||| ||||||||||    
T  10941428 tgaggcgtgaca-agtcactgtccttaagga-tttattcgcctcataagcgcatatc 10941482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 105 - 161
Target Start/End: Original strand, 10947297 - 10947351
Alignment:
Q  105 tgaggcgtgacatagtcactgtccttgaggattttatccgcctcattagcgcatatc 161  Q
    |||||||||||| ||||||||||||| |||| ||||| |||||||| ||||||||||    
T  10947297 tgaggcgtgaca-agtcactgtccttaagga-tttattcgcctcataagcgcatatc 10947351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 49; Significance: 8e-19; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 105 - 161
Target Start/End: Complemental strand, 110236 - 110180
Alignment:
Q  105 tgaggcgtgacatagtcactgtccttgaggattttatccgcctcattagcgcatatc 161  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  110236 tgaggcgtgacatagtcactgtccttgaggattttatccgcctcataaacgcatatc 110180  T

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Target: scaffold0028; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 105 - 149
Target Start/End: Complemental strand, 127815 - 127771
Alignment:
Q  105 tgaggcgtgacatagtcactgtccttgaggattttatccgcctca 149  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  127815 tgaggcgtgacatagtcactgtccttgaggattttatccgcctca 127771  T

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Target: scaffold0014 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 105 - 161
Target Start/End: Complemental strand, 82737 - 82681
Alignment:
Q  105 tgaggcgtgacatagtcactgtccttgaggattttatccgcctcattagcgcatatc 161  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  82737 tgaggcgtgacatagtcactatccttgaggattttatccgcctcataagcgcatatc 82681  T

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Target: chr6 (Bit Score: 49; Significance: 8e-19; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 105 - 161
Target Start/End: Original strand, 6591851 - 6591907
Alignment:
Q  105 tgaggcgtgacatagtcactgtccttgaggattttatccgcctcattagcgcatatc 161  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  6591851 tgaggcgtgacgtagtcactgtccttgaggattttatccgcctcataagcgcatatc 6591907  T

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Target: chr6; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 105 - 161
Target Start/End: Original strand, 19697847 - 19697903
Alignment:
Q  105 tgaggcgtgacatagtcactgtccttgaggattttatccgcctcattagcgcatatc 161  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  19697847 tgaggcgtgacatagtcattgtccttgaggattttatccgcctcataagcgcatatc 19697903  T

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Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 24 - 106
Target Start/End: Original strand, 3835586 - 3835668
Alignment:
Q  24 gtcggcaaactcgaagtaaacaaacacgaaatcatgaaagtgataacctgccaagaaataaaccattacataaacctgaggtg 106  Q
    ||||||||| ||||||||||||||||||||| ||||| ||||||||||||| ||  | ||||||||| ||||||| |||||||    
T  3835586 gtcggcaaaatcgaagtaaacaaacacgaaaccatgagagtgataacctgcaaaacagtaaaccattgcataaacatgaggtg 3835668  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 110 - 161
Target Start/End: Complemental strand, 15518127 - 15518076
Alignment:
Q  110 cgtgacatagtcactgtccttgaggattttatccgcctcattagcgcatatc 161  Q
    ||||||||||||||| |||||||||||| |||||||||||| ||||||||||    
T  15518127 cgtgacatagtcactttccttgaggattatatccgcctcataagcgcatatc 15518076  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 161 - 219
Target Start/End: Original strand, 2308756 - 2308816
Alignment:
Q  161 ctgttggccccaccacgtgtggg--ttatgtccagccaaagacaattgctacaagcaattg 219  Q
    |||||||||||||||||||||||  || | ||||||||||||||||| ||||||| |||||    
T  2308756 ctgttggccccaccacgtgtgggtattgtttccagccaaagacaattactacaagtaattg 2308816  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 105 - 161
Target Start/End: Original strand, 24044935 - 24044990
Alignment:
Q  105 tgaggcgtgacatagtcactgtccttgaggattttatccgcctcattagcgcatatc 161  Q
    |||||||||||| ||||||||||||| |||| ||||| |||||||| ||||||||||    
T  24044935 tgaggcgtgacaaagtcactgtccttaagga-tttattcgcctcataagcgcatatc 24044990  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 159
Target Start/End: Complemental strand, 19973783 - 19973730
Alignment:
Q  105 tgaggcgtgacatagtcactgtccttgaggattttatccgcctcattagcgcata 159  Q
    |||||||||||| ||||||||||||| | || |||||||||||||| ||||||||    
T  19973783 tgaggcgtgacaaagtcactgtccttaaaga-tttatccgcctcataagcgcata 19973730  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 162
Target Start/End: Original strand, 2936150 - 2936206
Alignment:
Q  105 tgaggcgtgacatagtcactgtccttgaggattttatccgcctcattagcgcatatct 162  Q
    ||||| |||||  ||||||||||||| ||||||| ||||||||||| |||||||||||    
T  2936150 tgaggtgtgacgaagtcactgtccttaaggattt-atccgcctcataagcgcatatct 2936206  T

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Target: scaffold0076 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 105 - 161
Target Start/End: Original strand, 6762 - 6818
Alignment:
Q  105 tgaggcgtgacatagtcactgtccttgaggattttatccgcctcattagcgcatatc 161  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| || |||||||    
T  6762 tgaggcgtgacatagtcactgtcattgaggattttatccgcctcataagtgcatatc 6818  T

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Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 105 - 160
Target Start/End: Complemental strand, 18594930 - 18594875
Alignment:
Q  105 tgaggcgtgacatagtcactgtccttgaggattttatccgcctcattagcgcatat 160  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||    
T  18594930 tgaggcgtgacattgtcactgtccttgaagattttatccgcctcataagcgcatat 18594875  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 109 - 161
Target Start/End: Original strand, 26703023 - 26703075
Alignment:
Q  109 gcgtgacatagtcactgtccttgaggattttatccgcctcattagcgcatatc 161  Q
    ||||||| |||||||||||||||||||||||||||||||||| | ||||||||    
T  26703023 gcgtgacttagtcactgtccttgaggattttatccgcctcataaacgcatatc 26703075  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 109 - 161
Target Start/End: Original strand, 26972756 - 26972808
Alignment:
Q  109 gcgtgacatagtcactgtccttgaggattttatccgcctcattagcgcatatc 161  Q
    ||||||| |||||||||||||||||||||||||||||||||| | ||||||||    
T  26972756 gcgtgacttagtcactgtccttgaggattttatccgcctcataaacgcatatc 26972808  T

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Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 105 - 161
Target Start/End: Complemental strand, 39292214 - 39292158
Alignment:
Q  105 tgaggcgtgacatagtcactgtccttgaggattttatccgcctcattagcgcatatc 161  Q
    ||||| |||| ||||||||||||||| ||||||||||||||||||| ||||||||||    
T  39292214 tgaggtgtgatatagtcactgtccttaaggattttatccgcctcataagcgcatatc 39292158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 31307327 - 31307397
Alignment:
Q  17 atttgatgtcggcaaactcgaagtaaacaaacacgaaatcatgaaa-gtgataacctgccaagaaataaac 86  Q
    |||||| ||||||||| ||||||| ||||||||||||| ||| ||| |||||||| |||||| | ||||||    
T  31307327 atttgaagtcggcaaaatcgaagtgaacaaacacgaaaccataaaaggtgataacttgccaaaatataaac 31307397  T

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Target: scaffold0293 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0293
Description:

Target: scaffold0293; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 4843 - 4927
Alignment:
Q  16 aatttgatgtcggcaaactcgaagtaaacaaacacgaaatcatgaaagtgataacctgccaagaaataaaccattacataaacct 100  Q
    ||||||| || |||||| || || ||||||||||||||| ||||| ||||||||||||| ||  | |||||||||||||||||||    
T  4843 aatttgaagttggcaaaatcaaattaaacaaacacgaaaccatgagagtgataacctgcaaaacagtaaaccattacataaacct 4927  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 105 - 161
Target Start/End: Original strand, 19930038 - 19930093
Alignment:
Q  105 tgaggcgtgacatagtcactgtccttgaggattttatccgcctcattagcgcatatc 161  Q
    |||||||||||| |||||| |||||| |||| |||||||||||||| ||||||||||    
T  19930038 tgaggcgtgacaaagtcaccgtccttaagga-tttatccgcctcataagcgcatatc 19930093  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 105 - 161
Target Start/End: Original strand, 42253564 - 42253619
Alignment:
Q  105 tgaggcgtgacatagtcactgtccttgaggattttatccgcctcattagcgcatatc 161  Q
    |||||||||||| ||||||||||||| |||| |||| ||||||||| ||||||||||    
T  42253564 tgaggcgtgacaaagtcactgtccttaagga-tttacccgcctcataagcgcatatc 42253619  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 160
Target Start/End: Original strand, 19935237 - 19935291
Alignment:
Q  105 tgaggcgtgacatagtcactgtccttgaggattttatccgcctcattagcgcatat 160  Q
    |||||||||||| ||||||||||||| |||| ||||||| |||||| |||||||||    
T  19935237 tgaggcgtgacaaagtcactgtccttaagga-tttatcctcctcataagcgcatat 19935291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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