View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9845_high_6 (Length: 430)
Name: NF9845_high_6
Description: NF9845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9845_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 19 - 413
Target Start/End: Original strand, 41106872 - 41107255
Alignment:
| Q |
19 |
agaactcctctctcttgcttcacattgcttccttgattttatgatcaattttcatgtctcatttcctcaattgattttccactttgaaagtatatgtaat |
118 |
Q |
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| T |
41106872 |
agaactcctctctcttgcttcacattgcttccttgattttatgatcaattttcatgtctcatttcctcaattgattttccactttgaaagtatatgtaat |
41106971 |
T |
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| Q |
119 |
tgaaattttctccattcgtatccaagcattaccttacctccctgattaaaattgaccttgttctcaatgtcatggccatgtattgtatatattgcataag |
218 |
Q |
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| T |
41106972 |
tgaaattttctccattcgtatccaagcattaccttacctccccgattaaaattgaccttgttctcaatgtcatggccatgtattgtatata-tgcataag |
41107070 |
T |
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| Q |
219 |
aatgtctactttactgcacaattgaatcaaatgtatcgtcaaattaccccataatttgatataggctttcagtgttgaaattttccttccacaccagtag |
318 |
Q |
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| T |
41107071 |
aatgtctgctttactgcacaattgaatcaaatgtatcatcaaattaccccataatttgatataggcttt----------attttccttccacaccagtag |
41107160 |
T |
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| Q |
319 |
gaaaacactaggcttgttgaatcttaaatattctgcacctgtatctgcatcaaatgtactacacagtatctccgtgattttccttgccacataat |
413 |
Q |
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| T |
41107161 |
gaaaacactaggcttgttgaatcttaaatattctgcacctgtatctgcatcaaatgtactacacagtatctccgtgattttccttgccacataat |
41107255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 118 - 190
Target Start/End: Complemental strand, 35708777 - 35708705
Alignment:
| Q |
118 |
ttgaaattttctccattcgtatccaagcattaccttacctccctgattaaaattgaccttgttctcaatgtca |
190 |
Q |
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| T |
35708777 |
ttgacattttccccatccgtatccaagcattaccttacctcccctattaagattgaccttgttctcaatgtca |
35708705 |
T |
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