View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9845_low_1 (Length: 862)
Name: NF9845_low_1
Description: NF9845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9845_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 196; Significance: 1e-106; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 302 - 619
Target Start/End: Complemental strand, 31037022 - 31036698
Alignment:
| Q |
302 |
aaggcaccacacaagctttaagaaacttgaccaatccttaatgtcacataatccaactttgtctcggcttctctatatacttttacacgatacaacattc |
401 |
Q |
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| T |
31037022 |
aaggtaccacacaagctttaagaaacttgaccaaaccttaatgtcaaataatccaactttgtctcagcttctctatatacttttacacgatacaaccttc |
31036923 |
T |
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| Q |
402 |
tctatgtacgatcctttccattcac-------cagcccgccattagaccttacaccaacgcctta-ccatcaaacgcatttgatgagtcctggtcccaaa |
493 |
Q |
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| T |
31036922 |
tctgtatacgattttttccattcactggccctcggccctccattagaccatacgccaacgcctttgccatccagcgcatttgatgagtcctggtcccaaa |
31036823 |
T |
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| Q |
494 |
ttattttgagatgctactattgctccaacatgatgatacaaaatatctgactaagtggccaagatgaacaagcaactttcactattatcttgtggaagaa |
593 |
Q |
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| T |
31036822 |
ttgttt-gagatgctactattgctccaacgtgagaatacaaaatttctgactaagtggctaagatgaacaagcaactttcactattatcttgtggaagaa |
31036724 |
T |
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| Q |
594 |
tttataagaagtaactttgtaatttt |
619 |
Q |
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| T |
31036723 |
tttataagaagtaactttgtaatttt |
31036698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 605 - 838
Target Start/End: Complemental strand, 31036681 - 31036449
Alignment:
| Q |
605 |
taactttgtaattttataatgagcggttatgccaagcataaagctggtatattgtatgttaaatgaatgccttcaattttgcaaattcttgccaagttca |
704 |
Q |
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| T |
31036681 |
taactttgtaattttataatgaacggttatgtcaagtatcaagctgttatattgtatgttaaatgaatgccgtca-ttttgcaaattgttgccaagttca |
31036583 |
T |
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| Q |
705 |
gattgatcaattatattttgcaaaacctgtcacatatgacagttggagatttgaaaagtacttgaaatgacgttaataagcttgttattccatctaagaa |
804 |
Q |
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| T |
31036582 |
aattgatcaattattttttgcaaaagctatcacatacgacagttggagatttaaatagtacttgaaatgatgttaataagcttgttattccatctaaaaa |
31036483 |
T |
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| Q |
805 |
taatgctaaaacttttgaagaaaatggttcatga |
838 |
Q |
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| T |
31036482 |
taatgctacaactcttaaagaaaatgcttcatga |
31036449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 68 - 126
Target Start/End: Complemental strand, 31037151 - 31037093
Alignment:
| Q |
68 |
gtatagttatctttaagaaggaagaaaatagagctgagtgagaatgttcaaaaaggaat |
126 |
Q |
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| T |
31037151 |
gtattgttatctttaagaaggaagaaaatagagctgagagagaatgttcaaaaaggaat |
31037093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 203 - 273
Target Start/End: Complemental strand, 31074289 - 31074219
Alignment:
| Q |
203 |
tgatgtatgctcaaaagaaacttgattcaatttcaatactagtgctcgaaatacttcggttgtctaatgtt |
273 |
Q |
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| T |
31074289 |
tgatgtgtgctcaaaagaaacttaatttaatttcaataccaatgctcaaaataattcgattctctaatgtt |
31074219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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