View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9845_low_12 (Length: 422)
Name: NF9845_low_12
Description: NF9845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9845_low_12 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 18 - 401
Target Start/End: Original strand, 42274794 - 42275174
Alignment:
| Q |
18 |
tatctaatgatcttgtacactttacgcacccttcaattattaaaaccttatcttaagccatgtcgaccattgcgttggcttgaagcagtcattacctcca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
42274794 |
tatctaatgatcttgtacactttacgcacccttcaattattaaaaccttatcttaagcattgtcgaccattgcgttggcttgaagcagtcattgcctcca |
42274893 |
T |
|
| Q |
118 |
agtaacaaacccaactaactaataagctcaataggacaataacataattactccaaaaccaataaacaataatagtaatatgaaaccaaaaccaaacctt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42274894 |
agtaacaaacccaactaactaataagctcaataggacaataacataa---ctccaaaaccaataaacaataatagtaatatgaaaccaaaaccaaacctt |
42274990 |
T |
|
| Q |
218 |
gaagcaaaagaaacttaccaacaatgacaaattcaataggaaacttagagggtggtgtcttgaaggaaaactcaggacccaaacctccacacctgtagaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42274991 |
gaagcaaaagaaacttaccaacaatgacaaattcaataggaaacttagagggtggtgtcttgaaggaaaactcaggacccaaacctccacacctgtagaa |
42275090 |
T |
|
| Q |
318 |
gtaagttgtgtttggctccaaaggcccaatcacagcattgtgtatttttccagaattgtagaaaaaatattggtacgatgtatg |
401 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42275091 |
gtaagttgtgtttggctccaaaggtccaatcacagcattgtgtatttttccagaattgtagaaaaaatattggtacgatgtatg |
42275174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 229 - 332
Target Start/End: Complemental strand, 26275701 - 26275598
Alignment:
| Q |
229 |
aacttaccaacaatgacaaattcaataggaaacttagag-ggtggtgtcttgaaggaaaactcaggacccaaacctccacacctgtagaagtaagttgtg |
327 |
Q |
| |
|
|||| ||| ||||| |||||||||||||| ||||| ||| || ||||||||||| |||||||||||||| | |||||||| |||||||||||||| ||| |
|
|
| T |
26275701 |
aactcacccacaatcacaaattcaataggcaactt-gagtggaggtgtcttgaaagaaaactcaggacctgatcctccacatctgtagaagtaagtagtg |
26275603 |
T |
|
| Q |
328 |
tttgg |
332 |
Q |
| |
|
|||| |
|
|
| T |
26275602 |
cttgg |
26275598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University