View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9845_low_14 (Length: 382)
Name: NF9845_low_14
Description: NF9845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9845_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 18 - 324
Target Start/End: Original strand, 23612286 - 23612590
Alignment:
| Q |
18 |
gatgttactttgttaagaatcatttcaagaattgtcctatctatatattgaaacaaataa--ttattggcattgtgatcattcacatatttttcttcccc |
115 |
Q |
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| T |
23612286 |
gatgttactttattaagaatcatttcaagaattgtcctatctatatattgaaacaaataaaattattggcattgagatcattcacatatttttcttcccc |
23612385 |
T |
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| Q |
116 |
tagtttgagttgctcagcctttggattcaccgaggagtgaacaccctattgtcattcaaattctagtactcttttgaacatagaaagttctccattagca |
215 |
Q |
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| T |
23612386 |
tagtttgagttgctccgcctttggattcgccgaggagtgaacaccctattgtcattcaaattctagtactcttttgaacatagaaagttctccattagca |
23612485 |
T |
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| Q |
216 |
tggcacgatagtaataatggccgtcgaatttgggtatcgccggttgttggaaattgctcgtttctgccatgatcgatcattcttgattgctttctttcac |
315 |
Q |
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| T |
23612486 |
tggcacgatagtaataatggccgtcgaatttgggtatcgccggttgttggaaattgctcgtttctgtcat----gatcattcttgattgctttctttcac |
23612581 |
T |
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| Q |
316 |
tcctgcttt |
324 |
Q |
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| T |
23612582 |
tcctgcttt |
23612590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 307 - 375
Target Start/End: Original strand, 23612606 - 23612674
Alignment:
| Q |
307 |
ttctttcactcctgctttacgtactcaaaaactacgtttttgtttgctcggtccccaaatgtacctatg |
375 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||| |
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| T |
23612606 |
ttctttcactcctgctttacatactcaaaaactacgtttttgtttgatcggtccccaaatgtagctatg |
23612674 |
T |
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