View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9845_low_15 (Length: 370)
Name: NF9845_low_15
Description: NF9845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9845_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 60 - 354
Target Start/End: Original strand, 33589155 - 33589449
Alignment:
| Q |
60 |
gagtgataaccctaatcacccactttatagaggagttagaatgcgaacatggggaaaatgggtatcggaaatccgtgaaccacgaaagaaaagtcgaatc |
159 |
Q |
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| T |
33589155 |
gagtgataaccctaatcacccactttatagaggagttagaatgcgaacatggggaaaatgggtatccgaaatccgtgaaccacgaaagaaaagtcgaatc |
33589254 |
T |
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| Q |
160 |
tggcttggaacgtatgctacggctgaaatggcggcgcgtgcacacgacgtggctgcacttaccttaaaaggctcatcggcaatccttaacttccctgaac |
259 |
Q |
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| T |
33589255 |
tggcttggaacatatgctacggctgaaatggcggcgcgtgcacacgacgtggctgcacttaccttaaaaggctcatcggcaatccttaacttccctgaac |
33589354 |
T |
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| Q |
260 |
tttcagcttcacttcctcaaccagcttctaacttgccaagagatattcaagccgcagccgccaaagccgcttccatggttgctccgcctccttct |
354 |
Q |
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| T |
33589355 |
tttcagcttcacttcctcaaccaacttctaactcgccaagagatattcaagccgcggccgccaaagccgcttccatggttgctccacctccttct |
33589449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 66 - 351
Target Start/End: Original strand, 33602280 - 33602565
Alignment:
| Q |
66 |
taaccctaatcacccactttatagaggagttagaatgcgaacatggggaaaatgggtatcggaaatccgtgaaccacgaaagaaaagtcgaatctggctt |
165 |
Q |
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| T |
33602280 |
taacactaagcatccagtttatagaggtgtaagaatgcgaacatggggaaaatgggtttctgaaatccgagaaccacgaaagaaaaaccgaatctggcta |
33602379 |
T |
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| Q |
166 |
ggaacgtatgctacggctgaaatggcggcgcgtgcacacgacgtggctgcacttaccttaaaaggctcatcggcaatccttaacttccctgaactttcag |
265 |
Q |
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| T |
33602380 |
ggaacattcgcaaccgctgaaatggcagcccgtgcacacgatgcagctgcacttactataaaaggttcatctgcaatccttaacttccccgaactttcag |
33602479 |
T |
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| Q |
266 |
cttcacttcctcaaccagcttctaacttgccaagagatattcaagccgcagccgccaaagccgcttccatggttgctccgcctcct |
351 |
Q |
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| T |
33602480 |
ctacacttccaagaccagcttccaactctccaagagatgttcaagctgccgcagttaaagccgcgtctatggttcctcctcctcct |
33602565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 83 - 212
Target Start/End: Complemental strand, 43290111 - 43289982
Alignment:
| Q |
83 |
tttatagaggagttagaatgcgaacatggggaaaatgggtatcggaaatccgtgaaccacgaaagaaaagtcgaatctggcttggaacgtatgctacggc |
182 |
Q |
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|||| ||||||||| ||||||| | ||||||||||||||||| |||||||| ||||| ||||||| | ||| |||||||| ||||||| ||| ||| | |
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| T |
43290111 |
tttacagaggagttcgaatgcgggcttggggaaaatgggtatccgaaatccgcgaaccgagaaagaagaatcggatctggctcggaacgtttgccacgcc |
43290012 |
T |
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| Q |
183 |
tgaaatggcggcgcgtgcacacgacgtggc |
212 |
Q |
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| T |
43290011 |
ggagatggcagcacgagcacatgacgtggc |
43289982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 98 - 191
Target Start/End: Complemental strand, 43561927 - 43561834
Alignment:
| Q |
98 |
gaatgcgaacatggggaaaatgggtatcggaaatccgtgaaccacgaaagaaaagtcgaatctggcttggaacgtatgctacggctgaaatggc |
191 |
Q |
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||||||||| |||||||||||||||||||||||||| ||||| || || ||| ||||||||||||||||| || ||||| |||||||||| |
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| T |
43561927 |
gaatgcgaagctggggaaaatgggtatcggaaatccgcgaacctcgcaaaaaatcacgaatctggcttggaacttacgctactcctgaaatggc |
43561834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 191
Target Start/End: Complemental strand, 16357950 - 16357844
Alignment:
| Q |
85 |
tatagaggagttagaatgcgaacatggggaaaatgggtatcggaaatccgtgaaccacgaaagaaaagtcgaatctggcttggaacgtatgctacggctg |
184 |
Q |
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|||||||| || |||||| || ||||||||||||||||||| ||||| ||||| ||| ||||||| |||| ||||||||||| || |||| |||| |
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| T |
16357950 |
tatagaggtgtaagaatgagagcatggggaaaatgggtatctgaaattcgtgagccaagaaagaagtcaagaatatggcttggaacataccctacagctg |
16357851 |
T |
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| Q |
185 |
aaatggc |
191 |
Q |
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| T |
16357850 |
aaatggc |
16357844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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