View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9845_low_16 (Length: 346)
Name: NF9845_low_16
Description: NF9845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9845_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 84; Significance: 7e-40; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 41 - 298
Target Start/End: Original strand, 3367573 - 3367825
Alignment:
| Q |
41 |
aaatacctaaaccaatttttcgatattttagaacgttgtctggatttcnnnnnnn-ctaattgctgcacacacactctctctccaaattatatgggtaac |
139 |
Q |
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|||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |
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| T |
3367573 |
aaatacttaaaccaattttttgatattttagaacgttgtctggatttcttttttttctaattgctgcacacacactcgctctccaaattatatgggtt-- |
3367670 |
T |
|
| Q |
140 |
tttgctcaagggnnnnnnnnctttctaaattatatcttgatgaattgggagtaatttacctctaatnnnnnnnntannnnnnnnnncatctttattctta |
239 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||| |
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| T |
3367671 |
tttgctcaagggttttt----tttctaaattatatcttgatgaattgggagtaatttacctctattaaagaaaattcatttttcttcatctttattctta |
3367766 |
T |
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| Q |
240 |
cgatcagttatcgttttcatctcaagaacattnnnnnnnttcatctcaagaacatcaaa |
298 |
Q |
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|||||||||||||||||||||||||||| ||| |||||||||||||||||||| |
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| T |
3367767 |
cgatcagttatcgttttcatctcaagaatattaaaaaaattcatctcaagaacatcaaa |
3367825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 270
Target Start/End: Complemental strand, 34601689 - 34601645
Alignment:
| Q |
226 |
catctttattcttacgatcagttatcgttttcatctcaagaacat |
270 |
Q |
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| T |
34601689 |
catctttattcttacgattagttattattttcatctcaaaaacat |
34601645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 270
Target Start/End: Original strand, 16863453 - 16863495
Alignment:
| Q |
228 |
tctttattcttacgatcagttatcgttttcatctcaagaacat |
270 |
Q |
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| T |
16863453 |
tctttattcttacaatcagttaccattttcatctcaagaacat |
16863495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 271
Target Start/End: Original strand, 37077648 - 37077692
Alignment:
| Q |
226 |
catctttattcttacgatcagttatcgttttcatctcaagaacatt |
271 |
Q |
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|||||||||||||| |||||||||| ||||||||||||||||||| |
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| T |
37077648 |
catctttattcttaa-atcagttatcattttcatctcaagaacatt |
37077692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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