View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9845_low_19 (Length: 297)

Name: NF9845_low_19
Description: NF9845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9845_low_19
NF9845_low_19
[»] chr4 (4 HSPs)
chr4 (2-283)||(7458151-7458432)
chr4 (2-283)||(7412072-7412354)
chr4 (191-271)||(13031387-13031467)
chr4 (187-265)||(7419361-7419439)
[»] scaffold0105 (5 HSPs)
scaffold0105 (2-258)||(3433-3689)
scaffold0105 (2-258)||(15580-15836)
scaffold0105 (2-258)||(35403-35659)
scaffold0105 (2-258)||(49003-49259)
scaffold0105 (2-258)||(9515-9771)
[»] scaffold0345 (1 HSPs)
scaffold0345 (2-258)||(3320-3576)
[»] scaffold1330 (1 HSPs)
scaffold1330 (2-197)||(1802-1997)
[»] scaffold0496 (1 HSPs)
scaffold0496 (2-125)||(3000-3123)


Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-144; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 2 - 283
Target Start/End: Original strand, 7458151 - 7458432
Alignment:
Q  2 aagtataataaaaacaataactcttgggttaccattggaagatttcctgagcaagccacttcaatgaaaggttggggattagcctttcgtgcatgtggag 101  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  7458151 aagtatgataaaaacaataactcttgggttaccattggaagatttcctgagcaagccacctcaatgaaaggttggggattagcttttcgtgcatgtggag 7458250  T
Q  102 atatgctaatttttctgggaggtcccattcttcattgtagaggcatgttggaaatcaatgcttgggtcccaaatgaaagagcgatacaatggaatcaact 201  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7458251 atatgctaatttttcttggaggtcccattcttcattgtagaggcatgttggaaatcaatgcttgggtcccaaatgaaagagcgatacaatggaatcaact 7458350  T
Q  202 tgcgagaaagaaaatagggagctttgtgtatagttgcattgtgatgggatgttgatgatgttctctgttgcatgaacttttt 283  Q
    ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  7458351 tgcaagaaagaaaatagggagctttgtgtatagttgcactgtgatgggatgttgatgatgttctctgttgcatgaacttttt 7458432  T

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Target: chr4; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 2 - 283
Target Start/End: Original strand, 7412072 - 7412354
Alignment:
Q  2 aagtataataaaaacaataactcttgggttaccattggaagatttcctgagcaagccacttcaatgaaaggttggggattagcctttcgtgcatgtggag 101  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  7412072 aagtatgataaaaacaataactcttgggttaccattggaagatttcctgagcaagccacctcaatgaaaggttggggattagcttttcgtgcatgtggag 7412171  T
Q  102 atatgctaatttttctgggaggtcccattcttcattgtagaggcatgttggaaatcaatgcttgggtcccaaatgaaagagcgatacaatggaatcaact 201  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7412172 atatgctaatttttcttggaggtcccattcttcattgtagaggcatgttggaaatcaatgcttgggtcccaaatgaaagagcgatacaatggaatcaact 7412271  T
Q  202 tgcgagaaagaaaatagggagctttgtgtatagttgcattgtgatgggatg-ttgatgatgttctctgttgcatgaacttttt 283  Q
    ||| |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  7412272 tgcaagaaagaaaatagggagctttgtgtatagttgcactgtgatgggatgtttgatgatgttctctgttgcatgaacttttt 7412354  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 191 - 271
Target Start/End: Original strand, 13031387 - 13031467
Alignment:
Q  191 tggaatcaacttgcgagaaagaaaatagggagctttgtgtatagttgcattgtgatgggatgttgatgatgttctctgttg 271  Q
    ||||||||||||||||||||| ||  ||||||||||||| |||  |||| |||||||||||||||||| |||||| |||||    
T  13031387 tggaatcaacttgcgagaaagcaatcagggagctttgtgcataactgcactgtgatgggatgttgatgttgttctatgttg 13031467  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 187 - 265
Target Start/End: Complemental strand, 7419439 - 7419361
Alignment:
Q  187 acaatggaatcaacttgcgagaaagaaaatagggagctttgtgtatagttgcattgtgatgggatgttgatgatgttct 265  Q
    |||||||||||| |||||||||||| ||  ||||||||||||| |||  |||| ||||||||||| |||||| ||||||    
T  7419439 acaatggaatcagcttgcgagaaagcaatcagggagctttgtgcataactgcactgtgatgggatattgatgttgttct 7419361  T

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Target: scaffold0105 (Bit Score: 73; Significance: 2e-33; HSPs: 5)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 2 - 258
Target Start/End: Complemental strand, 3689 - 3433
Alignment:
Q  2 aagtataataaaaacaataactcttgggttaccattggaagatttcctgagcaagccacttcaatgaaaggttggggattagcctttcgtgcatgtggag 101  Q
    |||||| ||||| |||| ||||||||||| | ||||||||| ||||| |||||||| ||||| ||||| |||||||||||||||||||| ||||| ||||    
T  3689 aagtatgataaagacaacaactcttgggtcatcattggaagctttcccgagcaagctacttcgatgaatggttggggattagcctttcgagcatgcggag 3590  T
Q  102 atatgctaatttttctgggaggtcccattcttcattgtagaggcatgttggaaatcaatgcttgggtcccaaatgaaagagcgatacaatggaatcaact 201  Q
    ||   ||| | ||||| ||||||||  || ||||| || ||   ||| ||||||||||||||||| ||||||||||| ||| |  |||||||||||  ||    
T  3589 atcatctattatttcttggaggtcctgttattcatggtggaataatgatggaaatcaatgcttggatcccaaatgaaggagagccacaatggaatcggct 3490  T
Q  202 tgcgagaaagaaaatagggagctttgtgtatagttgcattgtgatgggatgttgatg 258  Q
    |||  ||||  ||  |||| | |||||| ||| ||| | ||||||||||||||||||    
T  3489 tgcaggaaatcaatcagggggttttgtgcataattgtactgtgatgggatgttgatg 3433  T

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Target: scaffold0105; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 2 - 258
Target Start/End: Complemental strand, 15836 - 15580
Alignment:
Q  2 aagtataataaaaacaataactcttgggttaccattggaagatttcctgagcaagccacttcaatgaaaggttggggattagcctttcgtgcatgtggag 101  Q
    |||||| ||||| |||| ||||||||||| | ||||||||| ||||| |||||||| ||||| ||||| |||||||||||||||||||| ||||| ||||    
T  15836 aagtatgataaagacaacaactcttgggtcatcattggaagctttcccgagcaagctacttcgatgaatggttggggattagcctttcgagcatgcggag 15737  T
Q  102 atatgctaatttttctgggaggtcccattcttcattgtagaggcatgttggaaatcaatgcttgggtcccaaatgaaagagcgatacaatggaatcaact 201  Q
    ||   ||| | ||||| ||||||||  || ||||| || ||   ||| ||||||||||||||||| ||||||||||| ||| |  |||||||||||  ||    
T  15736 atcatctattatttcttggaggtcctgttattcatggtggaataatgatggaaatcaatgcttggatcccaaatgaaggagagccacaatggaatcggct 15637  T
Q  202 tgcgagaaagaaaatagggagctttgtgtatagttgcattgtgatgggatgttgatg 258  Q
    |||  ||||  ||  |||| | |||||| ||| ||| | ||||||||||||||||||    
T  15636 tgcaggaaatcaatcagggggttttgtgcataattgtactgtgatgggatgttgatg 15580  T

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Target: scaffold0105; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 2 - 258
Target Start/End: Original strand, 35403 - 35659
Alignment:
Q  2 aagtataataaaaacaataactcttgggttaccattggaagatttcctgagcaagccacttcaatgaaaggttggggattagcctttcgtgcatgtggag 101  Q
    |||||| ||||| |||| ||||||||||| | ||||||||| ||||| |||||||| ||||| ||||| |||||||||||||||||||| ||||| ||||    
T  35403 aagtatgataaagacaacaactcttgggtcatcattggaagctttcccgagcaagctacttcgatgaatggttggggattagcctttcgagcatgcggag 35502  T
Q  102 atatgctaatttttctgggaggtcccattcttcattgtagaggcatgttggaaatcaatgcttgggtcccaaatgaaagagcgatacaatggaatcaact 201  Q
    ||   ||| | ||||| ||||||||  || ||||| || ||   ||| ||||||||||||||||| ||||||||||| ||| |  |||||||||||  ||    
T  35503 atcatctattatttcttggaggtcctgttattcatggtggaataatgatggaaatcaatgcttggatcccaaatgaaggagagccacaatggaatcggct 35602  T
Q  202 tgcgagaaagaaaatagggagctttgtgtatagttgcattgtgatgggatgttgatg 258  Q
    |||  ||||  ||  |||| | |||||| ||| ||| | ||||||||||||||||||    
T  35603 tgcaggaaatcaatcagggggttttgtgcataattgtactgtgatgggatgttgatg 35659  T

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Target: scaffold0105; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 2 - 258
Target Start/End: Original strand, 49003 - 49259
Alignment:
Q  2 aagtataataaaaacaataactcttgggttaccattggaagatttcctgagcaagccacttcaatgaaaggttggggattagcctttcgtgcatgtggag 101  Q
    |||||| ||||| |||| ||||||||||| | ||||||||| ||||| |||||||| ||||| ||||| |||||||||||||||||||| ||||| ||||    
T  49003 aagtatgataaagacaacaactcttgggtcatcattggaagctttcccgagcaagctacttcgatgaatggttggggattagcctttcgagcatgcggag 49102  T
Q  102 atatgctaatttttctgggaggtcccattcttcattgtagaggcatgttggaaatcaatgcttgggtcccaaatgaaagagcgatacaatggaatcaact 201  Q
    ||   ||| | ||||| ||||||||  || ||||| || ||   ||| ||||||||||||||||| ||||||||||| ||| |  |||||||||||  ||    
T  49103 atcatctattatttcttggaggtcctgttattcatggtggaataatgatggaaatcaatgcttggatcccaaatgaaggagagccacaatggaatcggct 49202  T
Q  202 tgcgagaaagaaaatagggagctttgtgtatagttgcattgtgatgggatgttgatg 258  Q
    |||  ||||  ||  |||| | |||||| ||| ||| | ||||||||||||||||||    
T  49203 tgcaggaaatcaatcagggggttttgtgcataattgtactgtgatgggatgttgatg 49259  T

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Target: scaffold0105; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 2 - 258
Target Start/End: Complemental strand, 9771 - 9515
Alignment:
Q  2 aagtataataaaaacaataactcttgggttaccattggaagatttcctgagcaagccacttcaatgaaaggttggggattagcctttcgtgcatgtggag 101  Q
    |||||| ||||| |||| ||||||||||| | ||||||||| ||||| |||||||| ||||| ||||| |||||||||||||||||||| ||||| ||||    
T  9771 aagtatgataaagacaacaactcttgggtcatcattggaagctttcccgagcaagctacttcgatgaatggttggggattagcctttcgagcatgcggag 9672  T
Q  102 atatgctaatttttctgggaggtcccattcttcattgtagaggcatgttggaaatcaatgcttgggtcccaaatgaaagagcgatacaatggaatcaact 201  Q
    ||   ||| | ||||| ||||||||  || ||||| ||  |   ||| ||||||||||||||||| ||||||||||| ||| |  |||||||||||  ||    
T  9671 atcatctattatttcttggaggtcctgttattcatggtgcaataatgatggaaatcaatgcttggatcccaaatgaaggagagccacaatggaatcggct 9572  T
Q  202 tgcgagaaagaaaatagggagctttgtgtatagttgcattgtgatgggatgttgatg 258  Q
    |||  ||||  ||  |||| | |||||| ||| ||| | ||||||||||||||||||    
T  9571 tgcaggaaatcaatcagggggttttgtgcataattgtactgtgatgggatgttgatg 9515  T

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Target: scaffold0345 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 2 - 258
Target Start/End: Complemental strand, 3576 - 3320
Alignment:
Q  2 aagtataataaaaacaataactcttgggttaccattggaagatttcctgagcaagccacttcaatgaaaggttggggattagcctttcgtgcatgtggag 101  Q
    |||||| ||||| |||| ||||||||||| | ||||||||| ||||| |||||||| ||||| ||||| |||||||||||||||||||| ||||| ||||    
T  3576 aagtatgataaagacaacaactcttgggtcatcattggaagctttcccgagcaagctacttcgatgaatggttggggattagcctttcgagcatgcggag 3477  T
Q  102 atatgctaatttttctgggaggtcccattcttcattgtagaggcatgttggaaatcaatgcttgggtcccaaatgaaagagcgatacaatggaatcaact 201  Q
    ||   ||| | ||||| ||||||||  || ||||| ||  |   ||| ||||||||||||||||| ||||||||||| ||| |  |||||||||||  ||    
T  3476 atcatctattatttcttggaggtcctgttattcatggtgcaataatgatggaaatcaatgcttggatcccaaatgaaggagagccacaatggaatcggct 3377  T
Q  202 tgcgagaaagaaaatagggagctttgtgtatagttgcattgtgatgggatgttgatg 258  Q
    |||  ||||  ||  |||| | |||||| ||| ||| | ||||||||||||||||||    
T  3376 tgcaggaaatcaatcagggggttttgtgcataattgtactgtgatgggatgttgatg 3320  T

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Target: scaffold1330 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: scaffold1330
Description:

Target: scaffold1330; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 2 - 197
Target Start/End: Original strand, 1802 - 1997
Alignment:
Q  2 aagtataataaaaacaataactcttgggttaccattggaagatttcctgagcaagccacttcaatgaaaggttggggattagcctttcgtgcatgtggag 101  Q
    |||||| ||||| |||| ||||||||||| | ||||||||| ||||| |||||||| ||||| ||||| |||||||||||||||||||| ||||| ||||    
T  1802 aagtatgataaagacaacaactcttgggtcatcattggaagctttcccgagcaagctacttcgatgaatggttggggattagcctttcgagcatgcggag 1901  T
Q  102 atatgctaatttttctgggaggtcccattcttcattgtagaggcatgttggaaatcaatgcttgggtcccaaatgaaagagcgatacaatggaatc 197  Q
    ||   ||| | ||||| ||||||||  || ||||| ||  |   ||| ||||||||||||||||| ||||||||||| ||| |  |||||||||||    
T  1902 atcatctattatttcttggaggtcctgttattcatggtgcaataatgatggaaatcaatgcttggatcccaaatgaaggagagccacaatggaatc 1997  T

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Target: scaffold0496 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0496
Description:

Target: scaffold0496; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 125
Target Start/End: Original strand, 3000 - 3123
Alignment:
Q  2 aagtataataaaaacaataactcttgggttaccattggaagatttcctgagcaagccacttcaatgaaaggttggggattagcctttcgtgcatgtggag 101  Q
    |||||| ||||| |||| |||| |||||| | ||||||||| |||||||||||||| || ||  |||| ||||||||| |||| |||||  |||||||||    
T  3000 aagtatgataaagacaacaactattgggtcatcattggaagctttcctgagcaagctacatcggtgaatggttggggactagcatttcgatcatgtggag 3099  T
Q  102 atatgctaatttttctgggaggtc 125  Q
    |||  ||| | ||||| |||||||    
T  3100 ataaactattatttcttggaggtc 3123  T

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