View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9845_low_20 (Length: 296)
Name: NF9845_low_20
Description: NF9845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9845_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 9 - 280
Target Start/End: Original strand, 8527074 - 8527343
Alignment:
| Q |
9 |
agcaaaggtgcattttgttatatttcctactactatcttctttggtcttgacaaaaaattaataacagtggatcatataatcatgcagtctccctcatta |
108 |
Q |
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| T |
8527074 |
agcaaaggtgcattttgttatatttcctactactatcttctttggtcttgacaaaaaatgaataacagtggatcatataatcatgcagtttccctcgtta |
8527173 |
T |
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| Q |
109 |
gacaaggaaagaatgtgagtagacataatcaacaagaactagaccccagtaaaatatttctgaatttaaatatnnnnnnngagggatatgtgtttacacc |
208 |
Q |
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| T |
8527174 |
gacaaggaaagaatgtgagtagacataataaacaaaaactagaccccagtaaaatatttctgaatttaaata--aaaaaaaagggatatgtgttaacacc |
8527271 |
T |
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| Q |
209 |
aacaaccaatgataatcaagtatttttaaaatgcatatttaaaagtgaaatatagttttagattgacaatac |
280 |
Q |
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| T |
8527272 |
aacaaccaatgataatcaagtatttttaaaatgcatatttaaaagtgaaatatagttttagattgacaatac |
8527343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 201 - 279
Target Start/End: Original strand, 8533846 - 8533924
Alignment:
| Q |
201 |
tttacaccaacaaccaatgataatcaagtatttttaaaatgcatatttaaaagtgaaatatagttttagattgacaata |
279 |
Q |
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| T |
8533846 |
tttacaccgacaaccaatgacaatcaagtatttttaaaatgcatatttaaaagtgaaatatagttttagattgacaata |
8533924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 36 - 103
Target Start/End: Original strand, 8532632 - 8532699
Alignment:
| Q |
36 |
tactactatcttctttggtcttgacaaaaaattaataacagtggatcatataatcatgcagtctccct |
103 |
Q |
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| T |
8532632 |
tacttctatcttctttagtcttgacaaaaaatgaattacagtggatcatataatcatgcagtctccct |
8532699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 201 - 280
Target Start/End: Complemental strand, 26325338 - 26325259
Alignment:
| Q |
201 |
tttacaccaacaaccaatgataatcaagtatttttaaaatgcatatttaaaagtgaaatatagttttagattgacaatac |
280 |
Q |
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| T |
26325338 |
tttacaccgacaaccaatgacaatcaagtatttttaaaacacatatttaaaagtgaaatatagttttagattgacaatac |
26325259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 196 - 279
Target Start/End: Original strand, 9441603 - 9441676
Alignment:
| Q |
196 |
atgtgtttacaccaacaaccaatgataatcaagtatttttaaaatgcatatttaaaagtgaaatatagttttagattgacaata |
279 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
9441603 |
atgtgtttacaccaacaaccaatgataatcaa----------aatgcatatttaaaagtgaaatatagttttagattgacaata |
9441676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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