View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9845_low_21 (Length: 295)
Name: NF9845_low_21
Description: NF9845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9845_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 17 - 288
Target Start/End: Original strand, 14221608 - 14221879
Alignment:
| Q |
17 |
ataaatgagtgtttaggcctccctcccaatttcctcaaagaattcaacaatgacagaagctgggatatcatggtggcatttcgttacattccagcttcaa |
116 |
Q |
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| T |
14221608 |
ataaatgagtgtttaggcctccctcccaatttcctcaaagaattcaacaatgacagaagctgggatatcatggtggcatttcgttacattccagcttcaa |
14221707 |
T |
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| Q |
117 |
acaacgaaaatgtcggactcagggagcatcaagatgtcaactgtgttaccttagttcttcaagatgaagtaggaggtttggaagtccttagcaatgaaga |
216 |
Q |
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| T |
14221708 |
acaacgaaaatgtcggactcagggagcatcaagatgtcaactgtgttaccttagttcttcaagatgaagtaggaggtttggaagtccttagcaatgaaga |
14221807 |
T |
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| Q |
217 |
atgggttcctgttgttcctgcagaaggcaccatagtggttaatgttggtgatgttattcaggtaatcctatg |
288 |
Q |
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| T |
14221808 |
atgggttcctgttgttcctgcagaaggcaccatagtggttaatgttggtgatgttattcaggtaatcctatg |
14221879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 17 - 281
Target Start/End: Original strand, 14211484 - 14211748
Alignment:
| Q |
17 |
ataaatgagtgtttaggcctccctcccaatttcctcaaagaattcaacaatgacagaagctgggatatcatggtggcatttcgttacattccagcttcaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||| | |||||||| | |
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| T |
14211484 |
ataaatgagtgtttaggcctccctcccaatttcctcaaagaattcaacaatgacagaagctgggatttcatggtggccttgcgttacttaccagcttcta |
14211583 |
T |
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| Q |
117 |
acaacgaaaatgtcggactcagggagcatcaagatgtcaactgtgttaccttagttcttcaagatgaagtaggaggtttggaagtccttagcaatgaaga |
216 |
Q |
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| T |
14211584 |
acaacgaaaatgtcggaatcacagagcatgaagatggcaactgtgttacctttgttcttcaagatgaagtaggaggtttggaagtccttagtaatgaaga |
14211683 |
T |
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| Q |
217 |
atgggttcctgttgttcctgcagaaggcaccatagtggttaatgttggtgatgttattcaggtaa |
281 |
Q |
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| T |
14211684 |
atgggttcctgttgttcctgcagaaggcactatagtggttaatgttggtgatgttattcaggtaa |
14211748 |
T |
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