View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9845_low_22 (Length: 295)
Name: NF9845_low_22
Description: NF9845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9845_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 156; Significance: 7e-83; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 15419388 - 15419559
Alignment:
| Q |
18 |
atcaaaaataagatagaagaagaaggatgcccccaaaattatgaccaaataattgtgcaagtatcattattcagttggagattccatgttccaacaaccc |
117 |
Q |
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| T |
15419388 |
atcaaaaataagatagaagaagaaggatgcccccaaaattatgaccaattaattgtgcaagtatcattattgagttggagattccatgttccaacaaccc |
15419487 |
T |
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| Q |
118 |
aaatgccgtatttgatgttatttgaacatttaaaagttgacggtgtaattgacactaaataaaattatctat |
189 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |
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| T |
15419488 |
aaatgccgtatttgatgttatttgaacatttaatagttgacggtgtaattgacaccaaataaaattatctat |
15419559 |
T |
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