View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9845_low_23 (Length: 288)

Name: NF9845_low_23
Description: NF9845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9845_low_23
NF9845_low_23
[»] chr4 (13 HSPs)
chr4 (21-271)||(37827282-37827529)
chr4 (106-235)||(7877345-7877474)
chr4 (95-195)||(7771018-7771118)
chr4 (106-194)||(7904657-7904745)
chr4 (95-195)||(7789703-7789803)
chr4 (137-197)||(7907981-7908041)
chr4 (94-189)||(49044599-49044694)
chr4 (95-193)||(7238086-7238184)
chr4 (130-196)||(7765270-7765336)
chr4 (134-192)||(7822622-7822680)
chr4 (95-197)||(49041500-49041602)
chr4 (92-197)||(45372419-45372524)
chr4 (134-194)||(7774194-7774254)
[»] chr8 (6 HSPs)
chr8 (94-186)||(12194914-12195006)
chr8 (94-186)||(12439342-12439434)
chr8 (106-231)||(15348487-15348612)
chr8 (79-197)||(4032278-4032396)
chr8 (94-182)||(12199920-12200008)
chr8 (94-182)||(12444348-12444436)
[»] chr5 (3 HSPs)
chr5 (111-197)||(29695782-29695868)
chr5 (134-231)||(29687704-29687801)
chr5 (134-197)||(1812078-1812141)
[»] scaffold0508 (1 HSPs)
scaffold0508 (134-197)||(11915-11978)
[»] chr3 (2 HSPs)
chr3 (134-189)||(11006332-11006387)
chr3 (106-195)||(11024901-11024990)
[»] chr1 (1 HSPs)
chr1 (134-197)||(24309830-24309893)


Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 21 - 271
Target Start/End: Complemental strand, 37827529 - 37827282
Alignment:
Q  21 ctaagaaaaacaaagccgtatggagaatcaaaagctgtatctacctcacgacttgatcatcatcgaaatcttactgaggttgtcagtgatgtctcttata 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||   ||||||||||||||||||||||||| ||||||||||    
T  37827529 ctaagaaaaacaaagccgtatggagaatcaaaagctgtatctacctcacaacttgatcatc---gaaatcttactgaggttgtcagtgaagtctcttata 37827433  T
Q  121 agttttacatgcatttgtaagtcatggttaactcttatatctaatcccgactttgcaaattcacattttcaacttacggccacagcacaaactcgtcgaa 220  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37827432 agttttacatgcgtttgtaagtcatggttaactcttatatctaatcccgactttgcaaattcacattttcaacttacggccacagcacaaactcgtcgaa 37827333  T
Q  221 ttctgttcatatcacattcatcaattccaattcaatctagagattttgaat 271  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37827332 ttctgttcatatcacattcatcaattccaattcaatctagagattttgaat 37827282  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 106 - 235
Target Start/End: Original strand, 7877345 - 7877474
Alignment:
Q  106 gtgatgtctcttataagttttacatgcatttgtaagtcatggttaactcttatatctaatcccgactttgcaaattcacattttcaacttacggccacag 205  Q
    |||| |||||||||| |||| | |||||||||||||  ||||||  ||||||| ||| ||||| | ||||||||||||||||||||||| ||  |||||     
T  7877345 gtgaagtctcttatacgtttcaaatgcatttgtaagctatggttttctcttatctctgatcccaattttgcaaattcacattttcaactcaccaccacaa 7877444  T
Q  206 cacaaactcgtcgaattctgttcatatcac 235  Q
    | || |||| | ||||| ||| ||||||||    
T  7877445 cgcacactcctagaattatgtgcatatcac 7877474  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 95 - 195
Target Start/End: Original strand, 7771018 - 7771118
Alignment:
Q  95 tgaggttgtcagtgatgtctcttataagttttacatgcatttgtaagtcatggttaactcttatatctaatcccgactttgcaaattcacattttcaact 194  Q
    |||||||| | |||| |||||||||| |||| | |||| |||||||||| |||||  ||||||| ||| ||||  |||||| ||||||||||||||||||    
T  7771018 tgaggttgccggtgaagtctcttatatgtttcaaatgcgtttgtaagtcttggttttctcttatctctgatcctcactttgaaaattcacattttcaact 7771117  T
Q  195 t 195  Q
    |    
T  7771118 t 7771118  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 106 - 194
Target Start/End: Original strand, 7904657 - 7904745
Alignment:
Q  106 gtgatgtctcttataagttttacatgcatttgtaagtcatggttaactcttatatctaatcccgactttgcaaattcacattttcaact 194  Q
    |||| |||||||||| |||| | |||  ||||||||| ||||||  ||||||| ||| ||||  |||||||||||||||||||||||||    
T  7904657 gtgaagtctcttatacgtttcaaatgtgtttgtaagttatggttttctcttatctctgatcctcactttgcaaattcacattttcaact 7904745  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 195
Target Start/End: Original strand, 7789703 - 7789803
Alignment:
Q  95 tgaggttgtcagtgatgtctcttataagttttacatgcatttgtaagtcatggttaactcttatatctaatcccgactttgcaaattcacattttcaact 194  Q
    |||||||| | |||| |||||||||| |||| | |||| |||||||||| |||||  || |||| ||  ||||  |||||| ||||||||||||||||||    
T  7789703 tgaggttgccggtgaagtctcttatatgtttcaaatgcgtttgtaagtcttggttttcttttatctccgatcctcactttgaaaattcacattttcaact 7789802  T
Q  195 t 195  Q
    |    
T  7789803 t 7789803  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 197
Target Start/End: Original strand, 7907981 - 7908041
Alignment:
Q  137 gtaagtcatggttaactcttatatctaatcccgactttgcaaattcacattttcaacttac 197  Q
    |||||||||||||  ||||||| |||  |||| | ||||||||||||||||||||||||||    
T  7907981 gtaagtcatggttttctcttatctctgctccccattttgcaaattcacattttcaacttac 7908041  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 94 - 189
Target Start/End: Complemental strand, 49044694 - 49044599
Alignment:
Q  94 ctgaggttgtcagtgatgtctcttataagttttacatgcatttgtaagtcatggttaactcttatatctaatcccgactttgcaaattcacatttt 189  Q
    ||||||||| |||||||||||||| || |||| |  ||  ||||||||| ||||||  ||||||| ||| |  || ||||||||||||||||||||    
T  49044694 ctgaggttgccagtgatgtctcttttacgtttcaagtgtgtttgtaagttatggttttctcttatctctcaaacccactttgcaaattcacatttt 49044599  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 193
Target Start/End: Complemental strand, 7238184 - 7238086
Alignment:
Q  95 tgaggttgtcagtgatgtctcttataagttttacatgcatttgtaagtcatggttaactcttatatctaatcccgactttgcaaattcacattttcaac 193  Q
    |||||||| |||||| |||||||||  |||| | |||  |||||||||| |||||  ||||||| ||| | ||  ||||||||||||||||||| ||||    
T  7238184 tgaggttgccagtgaagtctcttatctgtttcaaatgtgtttgtaagtcttggttttctcttatctctgaccctcactttgcaaattcacatttccaac 7238086  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 196
Target Start/End: Original strand, 7765270 - 7765336
Alignment:
Q  130 tgcatttgtaagtcatggttaactcttatatctaatcccgactttgcaaattcacattttcaactta 196  Q
    ||||||||||||| ||||||  || |||| ||| ||||  ||||||||||||||||||| |||||||    
T  7765270 tgcatttgtaagttatggttttctattatctctgatcctcactttgcaaattcacatttccaactta 7765336  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 192
Target Start/End: Original strand, 7822622 - 7822680
Alignment:
Q  134 tttgtaagtcatggttaactcttatatctaatcccgactttgcaaattcacattttcaa 192  Q
    ||||||| ||||||||  ||||||| ||| ||||| |||||||||||||||| ||||||    
T  7822622 tttgtaaatcatggttttctcttatctctgatccccactttgcaaattcacaatttcaa 7822680  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 197
Target Start/End: Complemental strand, 49041602 - 49041500
Alignment:
Q  95 tgaggttgtcagtgatgtctcttataagttttacatgcatttgtaagtcatggttaactcttatatctaatcccgactttgcaaattcacattttcaact 194  Q
    |||| ||| |||||| |||||||||  |||| | |||| |||| ||||| |||||  ||||||| ||| ||||| | ||||||||||| |||||| ||||    
T  49041602 tgagattgccagtgaagtctcttatttgtttcaaatgcgtttgcaagtcttggttttctcttatctctgatccccattttgcaaattctcatttttaact 49041503  T
Q  195 tac 197  Q
    |||    
T  49041502 tac 49041500  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 197
Target Start/End: Complemental strand, 45372524 - 45372419
Alignment:
Q  92 tactgaggttgtcagtgatgtctcttataagttttacatgcatttgtaagtcatggttaactcttatatctaatcccgactttgcaaattcacattttca 191  Q
    |||| |||||| | |||| |||||||||| |||| | |||  |||||||||| |||||  || |||| ||| ||||  | ||||||||||||||||||||    
T  45372524 tactaaggttgccggtgaagtctcttatacgtttcaaatgtgtttgtaagtcttggttttctattatctctgatcctcattttgcaaattcacattttca 45372425  T
Q  192 acttac 197  Q
    | ||||    
T  45372424 aattac 45372419  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 194
Target Start/End: Complemental strand, 7774254 - 7774194
Alignment:
Q  134 tttgtaagtcatggttaactcttatatctaatcccgactttgcaaattcacattttcaact 194  Q
    ||||||||  ||||||  ||||||| ||| ||||| | |||||||||||||||||||||||    
T  7774254 tttgtaagctatggttttctcttatctctgatccccattttgcaaattcacattttcaact 7774194  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 94 - 186
Target Start/End: Original strand, 12194914 - 12195006
Alignment:
Q  94 ctgaggttgtcagtgatgtctcttataagttttacatgcatttgtaagtcatggttaactcttatatctaatcccgactttgcaaattcacat 186  Q
    ||||||||| | |||| ||||||| || |||| | |||||||||||||||||||||| ||||||| ||| ||||  |||||||||||||||||    
T  12194914 ctgaggttgccggtgaagtctcttttatgtttcaaatgcatttgtaagtcatggttatctcttatctctgatccacactttgcaaattcacat 12195006  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 94 - 186
Target Start/End: Original strand, 12439342 - 12439434
Alignment:
Q  94 ctgaggttgtcagtgatgtctcttataagttttacatgcatttgtaagtcatggttaactcttatatctaatcccgactttgcaaattcacat 186  Q
    ||||||||| | |||| ||||||| || |||| | |||||||||||||||||||||| ||||||| ||| ||||  |||||||||||||||||    
T  12439342 ctgaggttgccggtgaagtctcttttatgtttcaaatgcatttgtaagtcatggttatctcttatctctgatccacactttgcaaattcacat 12439434  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 106 - 231
Target Start/End: Original strand, 15348487 - 15348612
Alignment:
Q  106 gtgatgtctcttataagttttacatgcatttgtaagtcatggttaactcttatatctaatcccgactttgcaaattcacattttcaacttacggccacag 205  Q
    |||| |||||||||| |||| | |||| |||||||||| |||||  ||||||| ||| ||||  |||| |||||||||||||||||| |||| ||| ||     
T  15348487 gtgaagtctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctgatccttacttcgcaaattcacattttcaaattaccgccgcaa 15348586  T
Q  206 cacaaactcgtcgaattctgttcata 231  Q
    |||| |||||| ||||| ||| ||||    
T  15348587 cacacactcgtagaattttgtgcata 15348612  T

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Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 79 - 197
Target Start/End: Complemental strand, 4032396 - 4032278
Alignment:
Q  79 atcatcgaaatcttactgaggttgtcagtgatgtctcttataagttttacatgcatttgtaagtcatggttaactcttatatctaatcccgactttgcaa 178  Q
    |||||| |||||||||||||  |  || ||| |||||||||| |||| |  ||  ||||||| || |||||||||||||||||| ||||  |||||||||    
T  4032396 atcatccaaatcttactgagactaccaatgaagtctcttatacgtttcaagtgtgtttgtaaatcttggttaactcttatatctgatcctcactttgcaa 4032297  T
Q  179 attcacattttcaacttac 197  Q
    |||| ||||||||| ||||    
T  4032296 attcgcattttcaaattac 4032278  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 182
Target Start/End: Original strand, 12199920 - 12200008
Alignment:
Q  94 ctgaggttgtcagtgatgtctcttataagttttacatgcatttgtaagtcatggttaactcttatatctaatcccgactttgcaaattc 182  Q
    ||||||||| | |||| ||||||| || |||| | |||  ||||||||||||||||  ||||||| ||| ||||  |||||||||||||    
T  12199920 ctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctgatcctcactttgcaaattc 12200008  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 182
Target Start/End: Original strand, 12444348 - 12444436
Alignment:
Q  94 ctgaggttgtcagtgatgtctcttataagttttacatgcatttgtaagtcatggttaactcttatatctaatcccgactttgcaaattc 182  Q
    ||||||||| | |||| ||||||| || |||| | |||  ||||||||||||||||  ||||||| ||| ||||  |||||||||||||    
T  12444348 ctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctgatcctcactttgcaaattc 12444436  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 111 - 197
Target Start/End: Original strand, 29695782 - 29695868
Alignment:
Q  111 gtctcttataagttttacatgcatttgtaagtcatggttaactcttatatctaatcccgactttgcaaattcacattttcaacttac 197  Q
    |||||||||  |||| | |||| ||||||||| ||||||| ||||||||||| | ||  ||||||||||||||||||||||||||||    
T  29695782 gtctcttattcgtttcaaatgcgtttgtaagttatggttatctcttatatctcaacctcactttgcaaattcacattttcaacttac 29695868  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 134 - 231
Target Start/End: Original strand, 29687704 - 29687801
Alignment:
Q  134 tttgtaagtcatggttaactcttatatctaatcccgactttgcaaattcacattttcaacttacggccacagcacaaactcgtcgaattctgttcata 231  Q
    |||||||||| |||||  |||| |||||| | ||  ||||||||||||| |||||||||||||| ||||  ||||| |||| | ||||||||||||||    
T  29687704 tttgtaagtcttggttttctctcatatctcaacctcactttgcaaattctcattttcaacttaccgccaatgcacacactcctagaattctgttcata 29687801  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 134 - 197
Target Start/End: Original strand, 1812078 - 1812141
Alignment:
Q  134 tttgtaagtcatggttaactcttatatctaatcccgactttgcaaattcacattttcaacttac 197  Q
    ||||||||| ||||||  ||||||| || |||||| ||||||||||||  ||||||||||||||    
T  1812078 tttgtaagttatggttttctcttatctcaaatccccactttgcaaattatcattttcaacttac 1812141  T

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Target: scaffold0508 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 134 - 197
Target Start/End: Original strand, 11915 - 11978
Alignment:
Q  134 tttgtaagtcatggttaactcttatatctaatcccgactttgcaaattcacattttcaacttac 197  Q
    ||||||||||||||||  ||||||| ||| ||    ||||||||||||||||||||||||||||    
T  11915 tttgtaagtcatggttttctcttatctctgataatcactttgcaaattcacattttcaacttac 11978  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 134 - 189
Target Start/End: Complemental strand, 11006387 - 11006332
Alignment:
Q  134 tttgtaagtcatggttaactcttatatctaatcccgactttgcaaattcacatttt 189  Q
    ||||||||||||||||||||||||| ||| ||||  |||||||||| || ||||||    
T  11006387 tttgtaagtcatggttaactcttatctctgatcctcactttgcaaaatcgcatttt 11006332  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 195
Target Start/End: Complemental strand, 11024990 - 11024901
Alignment:
Q  106 gtgatgtctcttataagttttacatgcatttgtaagtcatggttaactcttatatctaatcccgactttgcaaattcacattttcaactt 195  Q
    |||| |||||| ||| |||| | |||| ||||||||||||||||| ||||||| ||| |||   |||||||||| || |||||| |||||    
T  11024990 gtgaagtctctcatacgtttcaaatgcgtttgtaagtcatggttagctcttatctctgatcataactttgcaaaatcgcattttgaactt 11024901  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 134 - 197
Target Start/End: Original strand, 24309830 - 24309893
Alignment:
Q  134 tttgtaagtcatggttaactcttatatctaatcccgactttgcaaattcacattttcaacttac 197  Q
    ||||||||| ||||||  ||||||| ||| || |  ||||||||||||||||||||||||||||    
T  24309830 tttgtaagttatggttttctcttatctctgattctcactttgcaaattcacattttcaacttac 24309893  T

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