View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9845_low_25 (Length: 270)
Name: NF9845_low_25
Description: NF9845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9845_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 19 - 260
Target Start/End: Original strand, 33716275 - 33716517
Alignment:
| Q |
19 |
gtaacatcctattttggttccaggctttccc-tggaacaggttctttgacagattttgcagagtttccattgattgtatcgacggaactcatcactccca |
117 |
Q |
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|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33716275 |
gtaacatcctattttgattccaggctttcccctggaacaggttctttgacagattttgcagagtttccattgattgtatcgacggaactcatcactcccg |
33716374 |
T |
|
| Q |
118 |
caacgttcacgatagatggatggtggaggaacgcaacaccaacttgaatccttccttccttgtgtacaacaacatgtttttcctcattcatcaaatccaa |
217 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
33716375 |
caacgttcacaatagatggatggtggaggaacgcaacaccaacttgaatccttccttccttgtgtacaacaacatgttgttcctcattcatcaaatccaa |
33716474 |
T |
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| Q |
218 |
ggcaaagctcttgcctttcatttgaacattgaccatttctatg |
260 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||| |
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| T |
33716475 |
ggcaaagctcttgcctttcatttgaacattgaccatttgtatg |
33716517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 16 - 260
Target Start/End: Original strand, 28697775 - 28698020
Alignment:
| Q |
16 |
tcagtaacatcctattttggttccaggctttccc-tggaacaggttctttgacagattttgcagagtttccattgattgtatcgacggaactcatcactc |
114 |
Q |
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||||||||||||| |||| |||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28697775 |
tcagtaacatcctgttttagttccaggatttcccctgaaacaggttctttgacagattttgcagagtttccattgattgtatcgacggaactcatcactc |
28697874 |
T |
|
| Q |
115 |
ccacaacgttcacgatagatggatggtggaggaacgcaacaccaacttgaatccttccttccttgtgtacaacaacatgtttttcctcattcatcaaatc |
214 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||| ||||||||| |||||||| |
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| T |
28697875 |
ccgcaacgttcacgatagatggatggtggaggaacgcaacaccaacctgaatccttccatccttgggtacaacaacatgttgttcctcatttatcaaatc |
28697974 |
T |
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| Q |
215 |
caaggcaaagctcttgcctttcatttgaacattgaccatttctatg |
260 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
28697975 |
caaggaaaagctcttgcctttcatttgaacattgaccatttctatg |
28698020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 16 - 259
Target Start/End: Complemental strand, 627814 - 627570
Alignment:
| Q |
16 |
tcagtaacatcctattttggttccaggctttccc-tggaacaggttctttgacagattttgcagagtttccattgattgtatcgacggaactcatcactc |
114 |
Q |
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||||||||||||| |||| ||| |||| |||||| || ||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||| |
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| T |
627814 |
tcagtaacatcctgttttagtttcaggatttcccctgaaacaggttctttgacagattttgtagagtttccattgattgtatccatggaactcatcactc |
627715 |
T |
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| Q |
115 |
ccacaacgttcacgatagatggatggtggaggaacgcaacaccaacttgaatccttccttccttgtgtacaacaacatgtttttcctcattcatcaaatc |
214 |
Q |
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|| || |||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||| |||||| ||||||||| |||||||||||||||||| |
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| T |
627714 |
ccgcagcgttcacgatagatggatggtggaagaatgcaacaccaacctgaatccttccttccttatgtacagcaacatgttgttcctcattcatcaaatc |
627615 |
T |
|
| Q |
215 |
caaggcaaagctcttgcctttcatttgaacattgaccatttctat |
259 |
Q |
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||||| ||||||||||| ||||||||||||||||||||||||||| |
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| T |
627614 |
caaggaaaagctcttgcatttcatttgaacattgaccatttctat |
627570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 19 - 97
Target Start/End: Complemental strand, 50793815 - 50793736
Alignment:
| Q |
19 |
gtaacatcctattttggttccaggctt-tccctggaacaggttctttgacagattttgcagagtttccattgattgtatc |
97 |
Q |
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|||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
50793815 |
gtaacatcctgttttggttccaggcttgtccctggaacaggttctttgacagattttgcagaatttccattgattgtatc |
50793736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 27711584 - 27711514
Alignment:
| Q |
16 |
tcagtaacatcctattttggttccaggctttccc-tggaacaggttctttgacagattttgcagagtttcc |
85 |
Q |
| |
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||||||||||||| ||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||| |
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| T |
27711584 |
tcagtaacatcctgttttggttccaggatttcccctggaacatgttctttgacagattttgcagagtttcc |
27711514 |
T |
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