View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9845_low_26 (Length: 264)
Name: NF9845_low_26
Description: NF9845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9845_low_26 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 13 - 264
Target Start/End: Complemental strand, 37497101 - 37496850
Alignment:
| Q |
13 |
ttgtgtccaatgtctgtgtttgtgtccctgcgtcgttgatgtcacatgtttttggtgcaaacagtctatatggtggaccacaatttgacctgtttaattt |
112 |
Q |
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| T |
37497101 |
ttgtgtccaatgtctgtgtttgtgtccctgcgtcgatgatgtcacatgtttttggtgcaaacagtctatatggtggaccacaatttgacctgtttaattt |
37497002 |
T |
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| Q |
113 |
aatggcaaacaatttggaacagtaaaggtaaagtttcttacttgaaacaatcaagcaaagattaataaaatttcatatttaagaggaagttcccttgaag |
212 |
Q |
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| T |
37497001 |
aatggcaaacaatttggaacagtaaaggtaaagtttcttacttgaaacaatcaagcaaagattaataaaatttcatatttaagaggaagttcccttgaag |
37496902 |
T |
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| Q |
213 |
gaaatgaatcaatgtttatacaattatgaataatcataaaaaatggtgtaat |
264 |
Q |
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| T |
37496901 |
gaaatgaatcaatgtttatacaattatgaataatcataaaaaatggtgtaat |
37496850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 215 - 264
Target Start/End: Complemental strand, 37496852 - 37496803
Alignment:
| Q |
215 |
aatgaatcaatgtttatacaattatgaataatcataaaaaatggtgtaat |
264 |
Q |
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| T |
37496852 |
aatgaatcaatgtttatacaattatgaataatcataaaaaatggtgtaat |
37496803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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