View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9845_low_27 (Length: 263)

Name: NF9845_low_27
Description: NF9845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9845_low_27
NF9845_low_27
[»] chr2 (4 HSPs)
chr2 (82-244)||(14033589-14033751)
chr2 (82-242)||(13892971-13893131)
chr2 (150-242)||(14033096-14033188)
chr2 (114-225)||(40254710-40254821)
[»] chr5 (5 HSPs)
chr5 (82-245)||(21022352-21022515)
chr5 (82-245)||(27739068-27739231)
chr5 (82-245)||(7072994-7073157)
chr5 (90-245)||(39236623-39236778)
chr5 (82-244)||(33229421-33229583)
[»] chr7 (1 HSPs)
chr7 (82-245)||(12909445-12909607)
[»] chr1 (3 HSPs)
chr1 (86-245)||(35605030-35605189)
chr1 (123-245)||(46406637-46406759)
chr1 (114-225)||(38843517-38843628)
[»] chr8 (5 HSPs)
chr8 (82-245)||(44239054-44239217)
chr8 (82-225)||(189999-190142)
chr8 (82-225)||(717603-717746)
chr8 (82-225)||(878710-878853)
chr8 (82-225)||(30983998-30984141)
[»] chr3 (4 HSPs)
chr3 (87-245)||(31813617-31813775)
chr3 (82-225)||(51128711-51128854)
chr3 (82-225)||(52692293-52692436)
chr3 (127-225)||(47141143-47141241)
[»] chr4 (4 HSPs)
chr4 (82-210)||(52057954-52058082)
chr4 (82-225)||(24037758-24037901)
chr4 (200-245)||(52058089-52058134)
chr4 (189-225)||(39382761-39382797)


Alignment Details
Target: chr2 (Bit Score: 159; Significance: 9e-85; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 82 - 244
Target Start/End: Complemental strand, 14033751 - 14033589
Alignment:
Q  82 ttaccttgttgttgttgttatcttttgagcataatttttcctttttgttgttctcttgagcacaatatttgctagcaggaggtggtgttgttatataacc 181  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14033751 ttaccttgttgttgttgttatcttttgagcagaatttttcctttttgttgttctcttgagcacaatatttgctagcaggaggtggtgttgttatataacc 14033652  T
Q  182 taatagcaataaatttttagattaaatttgtgaagggtggttgagttctagctagagaaaagt 244  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14033651 taatagcaataaatttttagattaaatttgtgaagggtggttgagttctagctagagaaaagt 14033589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 82 - 242
Target Start/End: Complemental strand, 13893131 - 13892971
Alignment:
Q  82 ttaccttgttgttgttgttatcttttgagcataatttttcctttttgttgttctcttgagcacaatatttgctagcaggaggtggtgttgttatataacc 181  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  13893131 ttaccttgttgttgttgttatcttttgagcagaatttttcctttttgttgttctcttgagcacaatatttgctagcaggaggtggtgtttttatataacc 13893032  T
Q  182 taatagcaataaatttttagattaaatttgtgaagggtggttgagttctagctagagaaaa 242  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13893031 taatagcaataaatttttagattaaatttgtgaagggtggttgagttctagctagagaaaa 13892971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 150 - 242
Target Start/End: Complemental strand, 14033188 - 14033096
Alignment:
Q  150 ttgctagcaggaggtggtgttgttatataacctaatagcaataaatttttagattaaatttgtgaagggtggttgagttctagctagagaaaa 242  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14033188 ttgctagcaggaggtggtgtttttatataacctaatagcaataaatttttagattaaatttgtgaagggtggttgagttctagctagagaaaa 14033096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 114 - 225
Target Start/End: Complemental strand, 40254821 - 40254710
Alignment:
Q  114 aatttttcctttttgttgttctcttgagcacaatatttgctagcaggaggtggtgttgttatataacctaatagcaataaatttttagattaaatttgtg 213  Q
    ||||||| ||| ||||||||||||| | |||||| ||| || | ||||| || ||||||||||||| || || | ||||||||||| ||||||||||| |    
T  40254821 aattttttcttcttgttgttctcttcaccacaatttttccttgtaggagatgatgttgttatataagctgatggtaataaatttttggattaaatttggg 40254722  T
Q  214 aagggtggttga 225  Q
    ||||||||||||    
T  40254721 aagggtggttga 40254710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 156; Significance: 6e-83; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 82 - 245
Target Start/End: Original strand, 21022352 - 21022515
Alignment:
Q  82 ttaccttgttgttgttgttatcttttgagcataatttttcctttttgttgttctcttgagcacaatatttgctagcaggaggtggtgttgttatataacc 181  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21022352 ttaccttgttcttgttgttatcttttgagcagaatttttcctttttgttgttctcttgagcacaatatttgctagcaggaggtggtgttgttatataacc 21022451  T
Q  182 taatagcaataaatttttagattaaatttgtgaagggtggttgagttctagctagagaaaagtg 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21022452 taatagcaataaatttttagattaaatttgtgaagggtggttgagttctagctagagaaaagtg 21022515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 82 - 245
Target Start/End: Original strand, 27739068 - 27739231
Alignment:
Q  82 ttaccttgttgttgttgttatcttttgagcataatttttcctttttgttgttctcttgagcacaatatttgctagcaggaggtggtgttgttatataacc 181  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27739068 ttaccttgttgttgttgttatcttttgagcagaatttatcctttttgttgttctcttgagcacaatatttgctagcaggaggtggtgttgttatataacc 27739167  T
Q  182 taatagcaataaatttttagattaaatttgtgaagggtggttgagttctagctagagaaaagtg 245  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  27739168 taatagcaataaatttttagattaaatttgtgaagggtggttgagttctaactagagaaaagtg 27739231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 82 - 245
Target Start/End: Original strand, 7072994 - 7073157
Alignment:
Q  82 ttaccttgttgttgttgttatcttttgagcataatttttcctttttgttgttctcttgagcacaatatttgctagcaggaggtggtgttgttatataacc 181  Q
    ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  7072994 ttaccttgttgttgttgttatcttttgagcagaatttttccttattgttgttctcttgagcacaatatttgctagcaggaggtgttgttgttatataacc 7073093  T
Q  182 taatagcaataaatttttagattaaatttgtgaagggtggttgagttctagctagagaaaagtg 245  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  7073094 taatagcaataaattttcagattaaatttgtgaagggtggttgagttctagctagagaaaagtg 7073157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 90 - 245
Target Start/End: Original strand, 39236623 - 39236778
Alignment:
Q  90 ttgttgttgttatcttttgagcataatttttcctttttgttgttctcttgagcacaatatttgctagcaggaggtggtgttgttatataacctaatagca 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39236623 ttgttgttgttatcttttgagcataatttttcctttttgttgttctcttgagcacaatatttgctagcaggaggtggtgttgttatataacctaatagca 39236722  T
Q  190 ataaatttttagattaaatttgtgaagggtggttgagttctagctagagaaaagtg 245  Q
    ||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||    
T  39236723 ataaatttttagagtaaatttgtgaagggtgattgagttatagctagagaaaagtg 39236778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 82 - 244
Target Start/End: Complemental strand, 33229583 - 33229421
Alignment:
Q  82 ttaccttgttgttg-ttgttatcttttgagcataatttttcctttttgttgttctcttgagcacaatatttgctagcaggaggtggtgttgttatataac 180  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||    
T  33229583 ttaccttgttgttgattgttatcttttgagcagaatttttcctttttgttgttctcttgagtaga-tatttgctagcaggaggtggtgttgttatataac 33229485  T
Q  181 ctaatagcaataaatttttagattaaatttgtgaagggtggttgagttctagctagagaaaagt 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33229484 ctaatagcaataaatttttagattaaatttgtgaagggtggttgagttctagctagagaaaagt 33229421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 82 - 245
Target Start/End: Complemental strand, 12909607 - 12909445
Alignment:
Q  82 ttaccttgttgttgttgttatcttttgagcataatttttcctttttgttgttctcttgagcacaatatttgctagcaggaggtggtgttgttatataacc 181  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  12909607 ttaccttgttgttgttgttatcttttgagcagaatttttcctttttgttgttctcttgagcacaatatttgctagc-ggaggtggtgttgttatataacc 12909509  T
Q  182 taatagcaataaatttttagattaaatttgtgaagggtggttgagttctagctagagaaaagtg 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12909508 taatagcaataaatttttagattaaatttgtgaagggtggttgagttctagctagagaaaagtg 12909445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 148; Significance: 3e-78; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 86 - 245
Target Start/End: Complemental strand, 35605189 - 35605030
Alignment:
Q  86 cttgttgttgttgttatcttttgagcataatttttcctttttgttgttctcttgagcacaatatttgctagcaggaggtggtgttgttatataacctaat 185  Q
    |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35605189 cttgttgttgttgttaccttttgagcagaatttttcctttttgttgttctcttgagcacaatatttgctagcaggaggtggtgttgttatataacctaat 35605090  T
Q  186 agcaataaatttttagattaaatttgtgaagggtggttgagttctagctagagaaaagtg 245  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  35605089 agcaataaattttcagattaaatttgtgaagggtggttgagttctagctagagaaaagtg 35605030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 123 - 245
Target Start/End: Complemental strand, 46406759 - 46406637
Alignment:
Q  123 tttttgttgttctcttgagcacaatatttgctagcaggaggtggtgttgttatataacctaatagcaataaatttttagattaaatttgtgaagggtggt 222  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  46406759 tttttgttgttctcttgagcacaatatttgctagcaagaggtggtgttgttatataacttaatagcaataaatttttagattaaatttgtgaagggtggt 46406660  T
Q  223 tgagttctagctagagaaaagtg 245  Q
    |||||||||||||||||||||||    
T  46406659 tgagttctagctagagaaaagtg 46406637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 114 - 225
Target Start/End: Complemental strand, 38843628 - 38843517
Alignment:
Q  114 aatttttcctttttgttgttctcttgagcacaatatttgctagcaggaggtggtgttgttatataacctaatagcaataaatttttagattaaatttgtg 213  Q
    ||||||| ||| ||||||||||||| | |||||| ||| || | ||||| || ||||||||||||| || || | ||||||||||| ||||||||||| |    
T  38843628 aattttttcttcttgttgttctcttcaccacaatttttccttgtaggagatgatgttgttatataagctgatggtaataaatttttggattaaatttggg 38843529  T
Q  214 aagggtggttga 225  Q
    ||||||||||||    
T  38843528 aagggtggttga 38843517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 144; Significance: 8e-76; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 82 - 245
Target Start/End: Complemental strand, 44239217 - 44239054
Alignment:
Q  82 ttaccttgttgttgttgttatcttttgagcataatttttcctttttgttgttctcttgagcacaatatttgctagcaggaggtggtgttgttatataacc 181  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  44239217 ttaccttgttgttgttgttatcttttaagcagaatttttcctttttgttgttctcttgagcacaatatttgctaggaggaggtggtgttgttatataacc 44239118  T
Q  182 taatagcaataaatttttagattaaatttgtgaagggtggttgagttctagctagagaaaagtg 245  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  44239117 taatagcaataaatttttagattaaatttgtgaagggtaattgagttctagctagagaaaagtg 44239054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 82 - 225
Target Start/End: Complemental strand, 190142 - 189999
Alignment:
Q  82 ttaccttgttgttgttgttatcttttgagcataatttttcctttttgttgttctcttgagcacaatatttgctagcaggaggtggtgttgttatataacc 181  Q
    ||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||| | |||||| ||| || | ||||| || ||||||||||||| |    
T  190142 ttaccttgttgttgttgttatcttttgagcagaattttttcttcttgttgttctcttcaccacaatttttccttgtaggagatgatgttgttatataagc 190043  T
Q  182 taatagcaataaatttttagattaaatttgtgaagggtggttga 225  Q
    | || | ||||||||||| ||||||||||| |||||||||||||    
T  190042 tgatggtaataaatttttggattaaatttgggaagggtggttga 189999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 82 - 225
Target Start/End: Complemental strand, 717746 - 717603
Alignment:
Q  82 ttaccttgttgttgttgttatcttttgagcataatttttcctttttgttgttctcttgagcacaatatttgctagcaggaggtggtgttgttatataacc 181  Q
    ||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||| | |||||| ||| || | ||||| || ||||||||||||| |    
T  717746 ttaccttgttgttgttgttatcttttgagcagaattttttcttcttgttgttctcttcaccacaatttttccttgtaggagatgatgttgttatataagc 717647  T
Q  182 taatagcaataaatttttagattaaatttgtgaagggtggttga 225  Q
    | || | ||||||||||| ||||||||||| |||||||||||||    
T  717646 tgatggtaataaatttttggattaaatttgggaagggtggttga 717603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 82 - 225
Target Start/End: Complemental strand, 878853 - 878710
Alignment:
Q  82 ttaccttgttgttgttgttatcttttgagcataatttttcctttttgttgttctcttgagcacaatatttgctagcaggaggtggtgttgttatataacc 181  Q
    ||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||| | |||||| ||| || | ||||| || ||||||||||||| |    
T  878853 ttaccttgttgttgttgttatcttttgagcagaattttttcttcttgttgttctcttcaccacaatttttccttgtaggagatgatgttgttatataagc 878754  T
Q  182 taatagcaataaatttttagattaaatttgtgaagggtggttga 225  Q
    | || | ||||||||||| ||||||||||| |||||||||||||    
T  878753 tgatggtaataaatttttggattaaatttgggaagggtggttga 878710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 82 - 225
Target Start/End: Original strand, 30983998 - 30984141
Alignment:
Q  82 ttaccttgttgttgttgttatcttttgagcataatttttcctttttgttgttctcttgagcacaatatttgctagcaggaggtggtgttgttatataacc 181  Q
    ||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||| | |||||| ||| || | ||||| || ||||||||||||| |    
T  30983998 ttaccttgttgttgttgttatcttttgagcagaattttttcttcttgttgttctcttcaccacaatttttccttgtaggagatgatgttgttatataagc 30984097  T
Q  182 taatagcaataaatttttagattaaatttgtgaagggtggttga 225  Q
    | || | ||||||||||| ||||||||||| |||||||||||||    
T  30984098 tgatggtaataaatttttggattaaatttgggaagggtggttga 30984141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 143; Significance: 3e-75; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 87 - 245
Target Start/End: Complemental strand, 31813775 - 31813617
Alignment:
Q  87 ttgttgttgttgttatcttttgagcataatttttcctttttgttgttctcttgagcacaatatttgctagcaggaggtggtgttgttatataacctaata 186  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||     
T  31813775 ttgttgttgttgttatcttttgagcagaatttttcctttttgttgttctcttgagcacaatatttgctagtaggaggtggtgttgttatataacctaatt 31813676  T
Q  187 gcaataaatttttagattaaatttgtgaagggtggttgagttctagctagagaaaagtg 245  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31813675 gcaacaaatttttagattaaatttgtgaagggtggttgagttctagctagagaaaagtg 31813617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 82 - 225
Target Start/End: Original strand, 51128711 - 51128854
Alignment:
Q  82 ttaccttgttgttgttgttatcttttgagcataatttttcctttttgttgttctcttgagcacaatatttgctagcaggaggtggtgttgttatataacc 181  Q
    ||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||| | |||||| ||| || | ||||| || ||||||||||||| |    
T  51128711 ttaccttgttgttgttgttatcttttgagcagaattttttcttcttgttgttctcttcaccacaatttttccttgtaggagatgatgttgttatataagc 51128810  T
Q  182 taatagcaataaatttttagattaaatttgtgaagggtggttga 225  Q
    | || | ||||||||||| ||||||||||| |||||||||||||    
T  51128811 tgatggtaataaatttttggattaaatttgggaagggtggttga 51128854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 82 - 225
Target Start/End: Complemental strand, 52692436 - 52692293
Alignment:
Q  82 ttaccttgttgttgttgttatcttttgagcataatttttcctttttgttgttctcttgagcacaatatttgctagcaggaggtggtgttgttatataacc 181  Q
    ||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||| | |||||| ||| || | ||||| || ||||||||||||| |    
T  52692436 ttaccttgttgttgttgttatcttttgagcagaattttttcttcttgttgttctcttcaccacaatttttccttgtaggagatgatgttgttatataagc 52692337  T
Q  182 taatagcaataaatttttagattaaatttgtgaagggtggttga 225  Q
    | || | ||||||||||| ||||||||||| |||||||||||||    
T  52692336 tgatggtaataaatttttggattaaatttgggaagggtggttga 52692293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 127 - 225
Target Start/End: Original strand, 47141143 - 47141241
Alignment:
Q  127 tgttgttctcttgagcacaatatttgctagcaggaggtggtgttgttatataacctaatagcaataaatttttagattaaatttgtgaagggtggttga 225  Q
    |||||||||||| | |||||| ||| || | ||||| || ||||||||||||| || || | ||||||||||| ||||||||||| |||||||||||||    
T  47141143 tgttgttctcttcaccacaatttttccttgtaggagatgatgttgttatataagctgatggtaataaatttttggattaaatttgggaagggtggttga 47141241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 105; Significance: 2e-52; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 82 - 210
Target Start/End: Original strand, 52057954 - 52058082
Alignment:
Q  82 ttaccttgttgttgttgttatcttttgagcataatttttcctttttgttgttctcttgagcacaatatttgctagcaggaggtggtgttgttatataacc 181  Q
    |||||||||||||||||||| |||||||||| ||  ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  52057954 ttaccttgttgttgttgttaccttttgagcaaaaaatttcctttttgttgttctcttgagcacaatatttgctagtaggaggtggtgttgttatataacc 52058053  T
Q  182 taatagcaataaatttttagattaaattt 210  Q
    ||||||||||||||||| |||||||||||    
T  52058054 taatagcaataaattttcagattaaattt 52058082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 82 - 225
Target Start/End: Original strand, 24037758 - 24037901
Alignment:
Q  82 ttaccttgttgttgttgttatcttttgagcataatttttcctttttgttgttctcttgagcacaatatttgctagcaggaggtggtgttgttatataacc 181  Q
    ||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||| | |||||| ||| || | ||||| || ||||||||||||| |    
T  24037758 ttaccttgttgttgttgttatcttttgagcagaattttttcttcttgttgttctcttcaccacaatttttccttgtaggagatgatgttgttatataagc 24037857  T
Q  182 taatagcaataaatttttagattaaatttgtgaagggtggttga 225  Q
    | || | ||||||||||| ||||||||||| |||||||||||||    
T  24037858 tgatggtaataaatttttggattaaatttgggaagggtggttga 24037901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 200 - 245
Target Start/End: Original strand, 52058089 - 52058134
Alignment:
Q  200 agattaaatttgtgaagggtggttgagttctagctagagaaaagtg 245  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||    
T  52058089 agattaaatttgtgaagggtggttgagttatagctagagaaaagtg 52058134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 225
Target Start/End: Original strand, 39382761 - 39382797
Alignment:
Q  189 aataaatttttagattaaatttgtgaagggtggttga 225  Q
    ||||||||||| ||||||||||| |||||||||||||    
T  39382761 aataaatttttggattaaatttgggaagggtggttga 39382797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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