View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9845_low_28 (Length: 259)
Name: NF9845_low_28
Description: NF9845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9845_low_28 |
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| [»] scaffold0147 (1 HSPs) |
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Alignment Details
Target: scaffold0147 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 20517 - 20275
Alignment:
| Q |
1 |
agaggaagaggagaagaaattgaaggtttatttttgtagtaggacacattcgcagctttcacagtttgtaaaggagttgagaaagacagtgtttgctgat |
100 |
Q |
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| T |
20517 |
agaggaagaggagaagaaattgaaggtttatttttgtagtaggacacattcgcagctttcacagtttgtaaaggagttgaggaaaacggtgtttgctgat |
20418 |
T |
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| Q |
101 |
gaaatgggtgttgtgagtttaggttccaggaaaaatctttgtattaatcaaggtatggaactttgcttaatctggaaagttattttttggtttccttttg |
200 |
Q |
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| T |
20417 |
gaaatgggtgttgtgagtttaggttccaggaaaaatctttgtattaatcaaggtatggaactttgcttaatctggaaagttattttttggtttccttttg |
20318 |
T |
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| Q |
201 |
attacttgattatgatcatgttgttacaaatgtttgtgttaca |
243 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20317 |
attacttgattatgatcatgttgttacaaatgtttgtgttaca |
20275 |
T |
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