View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9845_low_31 (Length: 253)
Name: NF9845_low_31
Description: NF9845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9845_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 35227448 - 35227696
Alignment:
| Q |
1 |
tcttctgatattgatgttgtttacgtgggatctctgaaggttgatgttgatgaaagtgagcaagagaatgtttcccagttgttggaggaattcaatttct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
35227448 |
tcttctgatattgatgttgtttacgtgggatctctgaaggttgatgttgatgaaagtgagcaagagaatgtttcccagttgttggaggaattcaattgct |
35227547 |
T |
|
| Q |
101 |
tccctacttttattccttcagaaatccagaaaaagttttatgacggattctgcaagaactatttgtggcctttatttcattacatgtttcctatttatca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
35227548 |
tccctacttttattccttcagaaatccagaaaaagttttatgacggattctgcaagaactatttgtggcctctatttcattacatgtttcctatttatca |
35227647 |
T |
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| Q |
201 |
tagttactgcaatggcttcgatgggtcactttggcaggcctatgcttct |
249 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
35227648 |
tagttactgcaatggcttcgatgggtcactttggcaggcttatgtttct |
35227696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 34507220 - 34507468
Alignment:
| Q |
1 |
tcttctgatattgatgttgtttacgtgggatctctgaaggttgatgttgatgaaagtgagcaagagaatgtttcccagttgttggaggaattcaatttct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| || |
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| T |
34507220 |
tcttctgatattgatgttgtttacgtgggatctctgaaggttgatgttgataaaagtgagcaagataatgtttcccagttgttggaggaattcaatagct |
34507319 |
T |
|
| Q |
101 |
tccctacttttattccttcagaaatccagaaaaagttttatgacggattctgcaagaactatttgtggcctttatttcattacatgtttcctatttatca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
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| T |
34507320 |
tccctacttttattccttcagaaatccagaaaaagttttatgacggattctgcaagaactatttgtggcctctatttcattacatgtttcctatgtatca |
34507419 |
T |
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| Q |
201 |
tagttactgcaatggcttcgatgggtcactttggcaggcctatgcttct |
249 |
Q |
| |
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||||||||||||||||| |||| ||||||||||||||| |||| |||| |
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| T |
34507420 |
gagttactgcaatggctttgatgagtcactttggcaggcttatgtttct |
34507468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 27618424 - 27618672
Alignment:
| Q |
1 |
tcttctgatattgatgttgtttacgtgggatctctgaaggttgatgttgatgaaagtgagcaagagaatgtttcccagttgttggaggaattcaatttct |
100 |
Q |
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|
||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||| |||||||||||||| |||| |||||||||| || |
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| T |
27618424 |
tcttctgatattgatgttgtttacgtgggatctctaaaggttaatgttgataaaagtgagcaagataatgtttcccagtttttggcggaattcaatagct |
27618523 |
T |
|
| Q |
101 |
tccctacttttattccttcagaaatccagaaaaagttttatgacggattctgcaagaactatttgtggcctttatttcattacatgtttcctatttatca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||| |
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| T |
27618524 |
tccctacttttattccttcagaaatccagaaaaagttttatgacggattctgcaagaactatttgtggcctctatttcattacatgtttcatatgtatca |
27618623 |
T |
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| Q |
201 |
tagttactgcaatggcttcgatgggtcactttggcaggcctatgcttct |
249 |
Q |
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||||||||||||||||| |||||||||||||||||||| |||| |||| |
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| T |
27618624 |
gagttactgcaatggctttgatgggtcactttggcaggcttatgtttct |
27618672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 34507776 - 34507541
Alignment:
| Q |
1 |
tcttctgatattgatgttgtttacgtgggatctctgaaggttgatgttgatgaaagtgagcaagagaatgtttcccagttgttggaggaattcaatttct |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||| || |||||||||||||||||| || |
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| T |
34507776 |
tcttatgatattgatgttgtttacgtgggatctctgaaaattgatgttgataaaagtgagcatgagaatgtttcctagatgttggaggaattcaattgct |
34507677 |
T |
|
| Q |
101 |
tccctacttttattccttcagaaatccagaaaaagttttatgacggattctgcaagaactatttgtggcctttatttcattacatgtttcctatttatca |
200 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
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| T |
34507676 |
tccctacttttattccttcag-aatctagaaaaagttttatgacgaattctgcaagaactatttgtggcctctatttcattacatgtttcctatgtatca |
34507578 |
T |
|
| Q |
201 |
tagttactgcaatggcttcgatgggtcactttggcag |
237 |
Q |
| |
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|||||||||| ||||||| |||||| |||||||||| |
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| T |
34507577 |
cagttactgcagtggcttcaatgggtaactttggcag |
34507541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 27621756 - 27621576
Alignment:
| Q |
1 |
tcttctgatattgatgttgtttacgtgggatctctgaaggttgatgttgatgaaagtgagcaagagaatgtttcccagttgttggaggaattcaatttct |
100 |
Q |
| |
|
|||| ||||||||||||||||| |||| ||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||| || |
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| T |
27621756 |
tcttttgatattgatgttgtttgcgtgtgatctctgaaggttgatgttgataaaagcgagcaagataatgtttcccagttgttggaggaattcaatagct |
27621657 |
T |
|
| Q |
101 |
tccctacttttattccttcagaaatccagaaaaagttttatgacggattctgcaagaactatttgtggcctttatttcatt |
181 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |
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| T |
27621656 |
tccctacttttattccttcagaaatccagaaaaagttttatgacggattctgcaagaactatttttggcctctatttcatt |
27621576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 87 - 249
Target Start/End: Complemental strand, 27621573 - 27621411
Alignment:
| Q |
87 |
ggaattcaatttcttccctacttttattccttcagaaatccagaaaaagttttatgacggattctgcaagaactatttgtggcctttatttcattacatg |
186 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||| |
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| T |
27621573 |
ggaattcaatagcttccctacttttattccttcagaaatccagaaaaagttttatgacggattctgcaagaactatttttggcctctatttcattccatg |
27621474 |
T |
|
| Q |
187 |
tttcctatttatcatagttactgcaatggcttcgatgggtcactttggcaggcctatgcttct |
249 |
Q |
| |
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|||||||| ||||| |||||||||| |||||||||||||| ||||||||| || |||| |||| |
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| T |
27621473 |
tttcctatgtatcagagttactgcagtggcttcgatgggtaactttggcaagcttatgtttct |
27621411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 25087789 - 25087624
Alignment:
| Q |
1 |
tcttctgatattgatgttgtttacgtgggat--ctctgaaggttga-tgttgatgaaagtgagcaagagaatgtttcccagttgttggaggaattcaatt |
97 |
Q |
| |
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|||| |||||||| ||| ||||| ||||||| ||||||||| ||| ||||||||||| |||| ||||||| ||||| || ||||||||||||||||| |
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| T |
25087789 |
tcttatgatattggtgtcgtttatgtgggatatctctgaaggatgaatgttgatgaaaatgagtgagagaatatttcctagaagttggaggaattcaatt |
25087690 |
T |
|
| Q |
98 |
tcttccctacttttattccttcagaaatccagaaaaagttttatgacggattctgcaagaactatt |
163 |
Q |
| |
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|||| ||||||||||||||| |||||||||||||||||| | |||||||| |||| ||||||| |
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| T |
25087689 |
tcttgcctacttttattcctctggaaatccagaaaaagtttaacgacggatttcgcaaaaactatt |
25087624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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