View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9845_low_32 (Length: 250)
Name: NF9845_low_32
Description: NF9845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9845_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 49296993 - 49297236
Alignment:
| Q |
1 |
tcttcatcttaaccgttccttaattccaatgcttaaaaaagctggtgctctttggctttaatctcaccag---gctcacacaaatctacttaataataat |
97 |
Q |
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| T |
49296993 |
tcttcatcttaaccgttccttaattccaatgcttaaaaaagctggtgctctttggctttaatctcaccagcaggctcacacaaatctacttaataataat |
49297092 |
T |
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| Q |
98 |
aagttgaccttttttggttatatattatatagagaggcaatgttgagttaatcttagagattatggcactaggtataattaattagtctaacttaattga |
197 |
Q |
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| T |
49297093 |
aagttgaccttttttggttatatat-atatagagaggcaatgttgagttaatcttagagattatggcactaggtataattaattagtctaacttaattga |
49297191 |
T |
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| Q |
198 |
tagatttggggtgccacttaaggacaaggatcttctacctttgct |
242 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49297192 |
tagatttggggtgccacttaaggacaaggatcttctacctttgct |
49297236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 49290042 - 49290285
Alignment:
| Q |
1 |
tcttcatcttaaccgttccttaattccaatgcttaaaaaagctggtgctctttggctttaatctcaccag---gctcacacaaatctacttaataataat |
97 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
49290042 |
tcttcatcttaaccgttccttaattccaatgcttaaaaaagctggtgctctttggctttaatctcaccagcaggctcacacaaatctacttaataataat |
49290141 |
T |
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| Q |
98 |
aagttgaccttttttggttatatattatatagagaggcaatgttgagttaatcttagagattatggcactaggtataattaattagtctaacttaattga |
197 |
Q |
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| T |
49290142 |
aagttgaccttttttggttatatat-atagagagaggcaatgttgagttaatcttagagattatggcactaggtataattaattagtctaacttaattga |
49290240 |
T |
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| Q |
198 |
tagatttggggtgccacttaaggacaaggatcttctacctttgct |
242 |
Q |
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| T |
49290241 |
tagatttggggtgccacttaaggacaaggatcttctacctttgct |
49290285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 49303723 - 49303788
Alignment:
| Q |
1 |
tcttcatcttaaccgttccttaattccaatgcttaaaaaagctggtgctctttggctttaatctca |
66 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49303723 |
tcttcatcttaaccgttccttaattccaatgcttaaaaaagctggtgctctttggctttaatctca |
49303788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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