View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9845_low_35 (Length: 243)
Name: NF9845_low_35
Description: NF9845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9845_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 138; Significance: 3e-72; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 19 - 192
Target Start/End: Original strand, 35226273 - 35226441
Alignment:
| Q |
19 |
actttctcttctattcccacaggtcctcgtctttatttgtgttgtttatactacatctttctagttgtggacactgattccaagttatactccactccta |
118 |
Q |
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| T |
35226273 |
actttctcttctattcccacaggtcctcgtctttatttgcgttgtttattctacatcttactagttgtggacgctgattccaagttatactccactccta |
35226372 |
T |
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| Q |
119 |
aatatctttagaaactgcgaagttgagtaaaatagtggaaagaatgggatcattcattaatctggtagacttag |
192 |
Q |
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| T |
35226373 |
aatatctttagaaactgcgaagttgagtaaaatagtggaaaga-----atcattcattaatctggtagacttag |
35226441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 130 - 243
Target Start/End: Original strand, 34506957 - 34507070
Alignment:
| Q |
130 |
aaactgcgaagttgagtaaaatagtggaaagaatgggatcattcattaatctggtagacttagtttctgcggataatatcaatttccgtcataggcagag |
229 |
Q |
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| T |
34506957 |
aaactgcgaagttgagtaaaatagtggaaagaatgggatcatgcattaatctggtggacttagtttctgcagataatatcaatttccatcgtaggcagag |
34507056 |
T |
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| Q |
230 |
caatgatcatgatt |
243 |
Q |
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| T |
34507057 |
caatgatcatgatt |
34507070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 130 - 243
Target Start/End: Original strand, 27618161 - 27618274
Alignment:
| Q |
130 |
aaactgcgaagttgagtaaaatagtggaaagaatgggatcattcattaatctggtagacttagtttctgcggataatatcaatttccgtcataggcagag |
229 |
Q |
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| T |
27618161 |
aaactgcaaagttgagtaaaatagtggaaagaatgggatcatgcattaatctggtagacttcgtttctgcagataatatcaatttccatcgtaggcagag |
27618260 |
T |
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| Q |
230 |
caatgatcatgatt |
243 |
Q |
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| T |
27618261 |
caacaatcatgatt |
27618274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 188 - 243
Target Start/End: Original strand, 35227244 - 35227299
Alignment:
| Q |
188 |
cttagtttctgcggataatatcaatttccgtcataggcagagcaatgatcatgatt |
243 |
Q |
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| T |
35227244 |
cttagtttctgaggataatatcaatttccgtcataggcagagcaatgatcatgatt |
35227299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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