View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9845_low_38 (Length: 241)
Name: NF9845_low_38
Description: NF9845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9845_low_38 |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 581169 - 580946
Alignment:
| Q |
1 |
cttttgaagcaaggttaagagaatatcaacactaacaaatccaacctccaaatgggtcaacattggaaatacacatagcttttttggtagcatctttttc |
100 |
Q |
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| T |
581169 |
cttttgaagcaaggttaagagaatatcaacactaacgaagccaacctccaaatgggtcaacattggaaatacacatagcttttttggtagcatctttttc |
581070 |
T |
|
| Q |
101 |
agatccagaacctggaatggatgacgcaacgaaactgatttatattataacaaaaggattaaactcataaatatttatcctacttgtgctacattattat |
200 |
Q |
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| T |
581069 |
agatccagaacctggaatggatgacacaacgaaactgatttatattacaacaaaaggattaaactcataaatatttatcctacttgtgatacattattat |
580970 |
T |
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| Q |
201 |
aaaaataaattacttcaagatcat |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
580969 |
aaaaataaattacttcaagatcat |
580946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 1207609 - 1207516
Alignment:
| Q |
1 |
cttttgaagcaaggttaagagaatatcaacactaacaaatccaacctccaaatgggtcaacattggaaatacacatagcttttttggtagcatc |
94 |
Q |
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| T |
1207609 |
cttttgaagtaatgctaagagaatttcgacactaactaagccaacctccaaatcggtcaacattggaaatacgcacagctcttttggttgcatc |
1207516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 1214817 - 1214741
Alignment:
| Q |
1 |
cttttgaagcaaggttaagagaatatcaacactaacaaatccaacctccaaatgggtcaacattggaaatacacata |
77 |
Q |
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| T |
1214817 |
cttttcaagcaaggctaacagaatatcaacactaagtaagccaacatccaaatgggccaacattggaaatacacata |
1214741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 1201412 - 1201351
Alignment:
| Q |
17 |
aagagaatatcaacactaacaaatccaacctccaaatgggtcaacattggaaatacacatag |
78 |
Q |
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|||||| |||||||||||| || |||||||||||||| |||||| ||| |||||||||||| |
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| T |
1201412 |
aagagattatcaacactaatcaagccaacctccaaatgtgtcaacgttgaaaatacacatag |
1201351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 8188771 - 8188851
Alignment:
| Q |
1 |
cttttgaagcaaggttaagagaatatcaacactaacaaatccaacctccaaatgggtcaacattggaaatacacatagctt |
81 |
Q |
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| T |
8188771 |
cttttgaagcaaggctaacagaatattaacactaactaaaccaacctccaaatcggtcaacattggaaatacacatagctt |
8188851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 146
Target Start/End: Original strand, 8188864 - 8188904
Alignment:
| Q |
106 |
cagaacctggaatggatgacgcaacgaaactgatttatatt |
146 |
Q |
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|||||||||||||| ||| | |||||||||||||||||||| |
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| T |
8188864 |
cagaacctggaatgaatggcacaacgaaactgatttatatt |
8188904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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