View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9845_low_39 (Length: 240)

Name: NF9845_low_39
Description: NF9845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9845_low_39
NF9845_low_39
[»] chr3 (27 HSPs)
chr3 (1-223)||(3962681-3962911)
chr3 (54-152)||(40993276-40993374)
chr3 (115-180)||(7614417-7614482)
chr3 (98-152)||(18426969-18427023)
chr3 (75-152)||(20503485-20503562)
chr3 (115-179)||(7928443-7928507)
chr3 (98-166)||(25093508-25093576)
chr3 (75-159)||(8789510-8789596)
chr3 (77-152)||(24633365-24633440)
chr3 (119-177)||(11658810-11658868)
chr3 (79-148)||(3631708-3631777)
chr3 (125-177)||(16192762-16192814)
chr3 (115-174)||(32429382-32429441)
chr3 (121-159)||(4469863-4469901)
chr3 (99-153)||(8842348-8842402)
chr3 (122-164)||(29112289-29112331)
chr3 (120-174)||(32804547-32804601)
chr3 (98-164)||(45451561-45451627)
chr3 (117-154)||(10690266-10690303)
chr3 (73-178)||(13845485-13845590)
chr3 (75-152)||(55401095-55401172)
chr3 (125-177)||(1438799-1438851)
chr3 (98-154)||(2941576-2941632)
chr3 (115-167)||(4201401-4201453)
chr3 (115-167)||(21419457-21419509)
chr3 (73-174)||(28917999-28918102)
chr3 (98-154)||(35222956-35223012)
[»] chr1 (27 HSPs)
chr1 (1-223)||(13997824-13998048)
chr1 (48-152)||(38078596-38078700)
chr1 (111-177)||(1864878-1864944)
chr1 (54-152)||(51410045-51410143)
chr1 (75-164)||(40181879-40181968)
chr1 (76-164)||(1815265-1815353)
chr1 (71-167)||(28674805-28674901)
chr1 (117-173)||(34257914-34257970)
chr1 (54-178)||(40258874-40258998)
chr1 (115-176)||(2784552-2784613)
chr1 (75-152)||(5898228-5898305)
chr1 (54-174)||(2896062-2896182)
chr1 (98-174)||(36878459-36878535)
chr1 (115-159)||(44482243-44482287)
chr1 (115-167)||(52903254-52903306)
chr1 (115-174)||(6415003-6415062)
chr1 (115-154)||(30749858-30749897)
chr1 (115-154)||(30771309-30771348)
chr1 (115-154)||(34371731-34371770)
chr1 (115-158)||(48148039-48148082)
chr1 (112-154)||(10233271-10233313)
chr1 (115-164)||(7918213-7918262)
chr1 (115-164)||(13436466-13436515)
chr1 (75-152)||(22515849-22515926)
chr1 (98-174)||(21530687-21530763)
chr1 (115-159)||(25361899-25361943)
chr1 (103-159)||(29163371-29163427)
[»] chr2 (16 HSPs)
chr2 (68-177)||(31808072-31808181)
chr2 (73-164)||(5367200-5367291)
chr2 (75-152)||(2438681-2438758)
chr2 (75-164)||(20242689-20242778)
chr2 (76-166)||(30404813-30404903)
chr2 (115-161)||(38355889-38355935)
chr2 (116-177)||(23718021-23718082)
chr2 (116-177)||(24105693-24105754)
chr2 (119-174)||(37411250-37411305)
chr2 (112-167)||(39279680-39279735)
chr2 (115-178)||(44860314-44860377)
chr2 (125-174)||(21616760-21616809)
chr2 (115-164)||(31026703-31026752)
chr2 (115-164)||(34784984-34785033)
chr2 (126-174)||(19573976-19574024)
chr2 (68-148)||(29176448-29176528)
[»] chr5 (23 HSPs)
chr5 (54-174)||(28588615-28588735)
chr5 (73-164)||(30502348-30502439)
chr5 (73-164)||(30542691-30542782)
chr5 (75-159)||(21194085-21194169)
chr5 (98-177)||(23012393-23012471)
chr5 (113-172)||(23015989-23016048)
chr5 (115-177)||(12927649-12927711)
chr5 (98-159)||(18421826-18421887)
chr5 (77-174)||(27932233-27932330)
chr5 (98-154)||(42029770-42029826)
chr5 (115-174)||(3966501-3966560)
chr5 (98-164)||(17123056-17123122)
chr5 (111-173)||(23220982-23221044)
chr5 (117-167)||(30098331-30098381)
chr5 (115-164)||(6471891-6471940)
chr5 (115-164)||(17925174-17925223)
chr5 (115-164)||(22423814-22423863)
chr5 (73-150)||(30098998-30099075)
chr5 (117-154)||(39758290-39758327)
chr5 (119-164)||(41091263-41091308)
chr5 (75-123)||(15382534-15382582)
chr5 (116-164)||(17593725-17593773)
chr5 (75-159)||(26312782-26312866)
[»] chr8 (23 HSPs)
chr8 (104-174)||(4786329-4786399)
chr8 (73-166)||(33405344-33405437)
chr8 (77-164)||(14134707-14134794)
chr8 (113-166)||(11803265-11803318)
chr8 (108-164)||(7658471-7658527)
chr8 (75-178)||(3025545-3025648)
chr8 (73-152)||(31557016-31557095)
chr8 (75-159)||(40332204-40332288)
chr8 (115-166)||(11927088-11927139)
chr8 (113-152)||(22493514-22493553)
chr8 (115-154)||(26902177-26902216)
chr8 (99-166)||(31580113-31580180)
chr8 (117-171)||(34222948-34223002)
chr8 (119-173)||(34897084-34897138)
chr8 (116-177)||(4611529-4611590)
chr8 (115-164)||(12985400-12985449)
chr8 (115-164)||(13844598-13844647)
chr8 (115-164)||(18964185-18964234)
chr8 (115-164)||(33382021-33382070)
chr8 (98-159)||(38079012-38079073)
chr8 (98-171)||(38278160-38278233)
chr8 (115-151)||(8847277-8847313)
chr8 (116-164)||(31236580-31236628)
[»] chr7 (19 HSPs)
chr7 (54-172)||(21880152-21880270)
chr7 (66-154)||(39138462-39138550)
chr7 (98-177)||(20549786-20549865)
chr7 (115-174)||(22602712-22602771)
chr7 (75-175)||(27093375-27093475)
chr7 (75-175)||(27184826-27184926)
chr7 (72-152)||(41020516-41020596)
chr7 (117-172)||(27732243-27732298)
chr7 (115-177)||(9482929-9482991)
chr7 (102-151)||(640134-640183)
chr7 (118-174)||(26329387-26329443)
chr7 (92-159)||(3554485-3554552)
chr7 (73-148)||(33994236-33994311)
chr7 (114-164)||(17851439-17851489)
chr7 (119-164)||(12278843-12278888)
chr7 (77-174)||(15680807-15680904)
chr7 (105-154)||(18213025-18213074)
chr7 (115-164)||(23849460-23849509)
chr7 (121-169)||(24625237-24625285)
[»] chr4 (18 HSPs)
chr4 (58-152)||(40179581-40179675)
chr4 (76-180)||(8423681-8423785)
chr4 (54-177)||(23861370-23861495)
chr4 (98-152)||(29205464-29205518)
chr4 (75-152)||(49431046-49431123)
chr4 (125-177)||(903917-903969)
chr4 (125-173)||(22440612-22440660)
chr4 (121-164)||(30522923-30522966)
chr4 (115-154)||(46160914-46160953)
chr4 (115-165)||(5775360-5775410)
chr4 (54-152)||(16073414-16073512)
chr4 (54-152)||(35157926-35158024)
chr4 (54-152)||(36509033-36509131)
chr4 (98-152)||(54580008-54580062)
chr4 (101-174)||(21539855-21539928)
chr4 (75-152)||(23292948-23293025)
chr4 (119-159)||(13134463-13134503)
chr4 (118-154)||(40613468-40613504)
[»] chr6 (28 HSPs)
chr6 (77-174)||(9658877-9658974)
chr6 (99-174)||(19040350-19040425)
chr6 (98-164)||(32511651-32511717)
chr6 (83-159)||(13364675-13364751)
chr6 (98-177)||(31579212-31579289)
chr6 (98-164)||(7265578-7265644)
chr6 (121-178)||(5462680-5462737)
chr6 (115-164)||(9025496-9025545)
chr6 (115-164)||(19044472-19044521)
chr6 (115-159)||(14796192-14796236)
chr6 (115-174)||(5732512-5732571)
chr6 (104-159)||(7377992-7378047)
chr6 (54-152)||(28152118-28152216)
chr6 (54-152)||(33001230-33001328)
chr6 (115-152)||(7027262-7027299)
chr6 (115-164)||(7086803-7086852)
chr6 (54-123)||(9522951-9523020)
chr6 (115-164)||(9617442-9617491)
chr6 (115-164)||(11784218-11784267)
chr6 (75-152)||(12627539-12627616)
chr6 (91-152)||(26314612-26314673)
chr6 (75-152)||(34595154-34595231)
chr6 (115-159)||(9629396-9629440)
chr6 (119-159)||(11591876-11591916)
chr6 (115-159)||(13360374-13360418)
chr6 (126-174)||(17341677-17341725)
chr6 (119-159)||(26562702-26562742)
chr6 (115-171)||(34073349-34073405)
[»] scaffold0110 (1 HSPs)
scaffold0110 (113-174)||(28848-28909)
[»] scaffold0022 (1 HSPs)
scaffold0022 (73-165)||(90850-90942)
[»] scaffold0050 (1 HSPs)
scaffold0050 (75-166)||(70284-70375)
[»] scaffold0123 (1 HSPs)
scaffold0123 (117-159)||(44529-44571)
[»] scaffold0020 (1 HSPs)
scaffold0020 (115-177)||(135314-135376)
[»] scaffold0036 (1 HSPs)
scaffold0036 (115-164)||(9749-9798)
[»] scaffold0697 (1 HSPs)
scaffold0697 (98-174)||(1642-1718)
[»] scaffold0039 (1 HSPs)
scaffold0039 (115-159)||(84975-85019)


Alignment Details
Target: chr3 (Bit Score: 150; Significance: 2e-79; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 3962681 - 3962911
Alignment:
Q  1 tttctattatttaaacagcaaagtataagatgcacaagcacaatgtgatattatatgaagcatgaatactttttggattaggcgtgtcatggtgtttgac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||  ||||||||||||||||||    
T  3962681 tttctattatttaaacagcaaagtataagatgcacaagcacaatgtgatattatatggagtatgaatacttcttggattaaacgtgtcatggtgtttgac 3962780  T
Q  101 atgtgtcgtatccaacaccgacatatataataacactgaattatgtgattttcttaaataattaacg--------atgtcggtgtctggtatccatgtcc 192  Q
    ||| ||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||| |         ||||||||||||||||||||||||    
T  3962781 atgcgtcgtatccaacaccgacacatataataacactgagttatgttattttcttaaataattaagggtgtcggagtgtcggtgtctggtatccatgtcc 3962880  T
Q  193 gtatttatccttcatgggtgatattgcattt 223  Q
    |||||| || |||||||||||||||||||||    
T  3962881 gtatttgtctttcatgggtgatattgcattt 3962911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 54 - 152
Target Start/End: Original strand, 40993276 - 40993374
Alignment:
Q  54 tatgaagcatgaatactttttggattaggcgtgtcatggtgtttgacatgtgtcgtatccaacaccgacatatataataacactgaattatgtgatttt 152  Q
    ||||||||||| | |||  | ||||||||||||||  |||||  |||||||||||| ||| ||||||||| ||||||| ||||||||||||||||||||    
T  40993276 tatgaagcatggacactcctcggattaggcgtgtcccggtgtcggacatgtgtcgtgtccgacaccgacacatataattacactgaattatgtgatttt 40993374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 115 - 180
Target Start/End: Original strand, 7614417 - 7614482
Alignment:
Q  115 acaccgacatatataataacactgaattatgtgattttcttaaataattaacgatgtcggtgtctg 180  Q
    ||||||||||||||||| | ||||||||||||||||||||||||| ||||||  ||||||||||||    
T  7614417 acaccgacatatataattatactgaattatgtgattttcttaaattattaactgtgtcggtgtctg 7614482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 98 - 152
Target Start/End: Complemental strand, 18427023 - 18426969
Alignment:
Q  98 gacatgtgtcgtatccaacaccgacatatataataacactgaattatgtgatttt 152  Q
    |||| ||||||||||| ||||||||||||||||| |||| |||||||||||||||    
T  18427023 gacacgtgtcgtatccgacaccgacatatataattacaccgaattatgtgatttt 18426969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 75 - 152
Target Start/End: Complemental strand, 20503562 - 20503485
Alignment:
Q  75 ggattaggcgtgtcatggtgtttgacatgtgtcgtatccaacaccgacatatataataacactgaattatgtgatttt 152  Q
    ||||||||||||||  |||||  |||||||||||| |||||||||||||  | |||| |||||||||||||| |||||    
T  20503562 ggattaggcgtgtcccggtgtcagacatgtgtcgtgtccaacaccgacacttgtaattacactgaattatgtcatttt 20503485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 115 - 179
Target Start/End: Complemental strand, 7928507 - 7928443
Alignment:
Q  115 acaccgacatatataataacactgaattatgtgattttcttaaataattaacgatgtcggtgtct 179  Q
    ||||||||| ||||||| |||||||||||||||||||| | |||| |||| || |||||||||||    
T  7928507 acaccgacacatataattacactgaattatgtgattttttcaaattattagcggtgtcggtgtct 7928443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 98 - 166
Target Start/End: Complemental strand, 25093576 - 25093508
Alignment:
Q  98 gacatgtgtcgtatccaacaccgacatatataataacactgaattatgtgattttcttaaataattaac 166  Q
    ||||||||| || ||| ||||||||| ||||||| |||||||||| ||||||||||| |||| ||||||    
T  25093576 gacatgtgttgtgtccgacaccgacacatataattacactgaattgtgtgattttctcaaatcattaac 25093508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 159
Target Start/End: Original strand, 8789510 - 8789596
Alignment:
Q  75 ggattaggcgtgtcatggtgtttgacatgtgt--cgtatccaacaccgacatatataataacactgaattatgtgattttcttaaat 159  Q
    ||||||||||||||  |||||  |||||||||  ||| ||| ||||||||| ||||||| |||| ||||||||||||||||| ||||    
T  8789510 ggattaggcgtgtctcggtgtccgacatgtgtgtcgtgtccgacaccgacacatataattacacggaattatgtgattttctcaaat 8789596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 152
Target Start/End: Original strand, 24633365 - 24633440
Alignment:
Q  77 attaggcgtgtcatggtgtttgacatgtgtcgtatccaacaccgacatatataataacactgaattatgtgatttt 152  Q
    |||||||||||   |||||| |||| ||||||| ||||||||||||| ||||||| ||| ||||||| ||||||||    
T  24633365 attaggcgtgtaccggtgttagacaagtgtcgtgtccaacaccgacacatataattacattgaattacgtgatttt 24633440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 119 - 177
Target Start/End: Complemental strand, 11658868 - 11658810
Alignment:
Q  119 cgacatatataataacactgaattatgtgattttcttaaataattaacgatgtcggtgt 177  Q
    ||||| ||||||| ||||||||||||| |||||||| |||| ||||||||||| |||||    
T  11658868 cgacacatataatcacactgaattatgcgattttctcaaattattaacgatgttggtgt 11658810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 148
Target Start/End: Complemental strand, 3631777 - 3631708
Alignment:
Q  79 taggcgtgtcatggtgtttgacatgtgtcgtatccaacaccgacatatataataacactgaattatgtga 148  Q
    |||||||||| ||||||  |||||||||||| ||| |||| | || ||||||| ||||||||||||||||    
T  3631777 taggcgtgtcctggtgtcggacatgtgtcgtgtccgacactggcacatataattacactgaattatgtga 3631708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 177
Target Start/End: Original strand, 16192762 - 16192814
Alignment:
Q  125 atataataacactgaattatgtgattttcttaaataattaacgatgtcggtgt 177  Q
    ||||||| |||||||||||||| ||||||| |||| ||||||| |||||||||    
T  16192762 atataattacactgaattatgttattttctcaaattattaacggtgtcggtgt 16192814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 174
Target Start/End: Original strand, 32429382 - 32429441
Alignment:
Q  115 acaccgacatatataataacactgaattatgtgattttcttaaataattaacgatgtcgg 174  Q
    ||||||| || ||||||  |||||||||||||||||||||||||| |||| || ||||||    
T  32429382 acaccgatatttataattgcactgaattatgtgattttcttaaattattagcgttgtcgg 32429441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 159
Target Start/End: Complemental strand, 4469901 - 4469863
Alignment:
Q  121 acatatataataacactgaattatgtgattttcttaaat 159  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  4469901 acatatatacttacactgaattatgtgattttcttaaat 4469863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 153
Target Start/End: Complemental strand, 8842402 - 8842348
Alignment:
Q  99 acatgtgtcgtatccaacaccgacatatataataacactgaattatgtgattttc 153  Q
    ||||||||||| ||  ||||||||||||||||| ||||  |||||||||||||||    
T  8842402 acatgtgtcgtgtctgacaccgacatatataattacaccaaattatgtgattttc 8842348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 164
Target Start/End: Original strand, 29112289 - 29112331
Alignment:
Q  122 catatataataacactgaattatgtgattttcttaaataatta 164  Q
    |||||||||| |||||||||||| ||||||||| |||||||||    
T  29112289 catatataattacactgaattatatgattttctcaaataatta 29112331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 174
Target Start/End: Original strand, 32804547 - 32804601
Alignment:
Q  120 gacatatataataacactgaattatgtgattttcttaaataattaacgatgtcgg 174  Q
    |||| ||||||| ||||| |||||||||||||||| |||| ||||||| ||||||    
T  32804547 gacacatataattacactaaattatgtgattttctcaaattattaacggtgtcgg 32804601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 164
Target Start/End: Complemental strand, 45451627 - 45451561
Alignment:
Q  98 gacatgtgtcgtatccaacaccgacatatataataacactgaattatgtgattttcttaaataatta 164  Q
    |||||||||||| ||| ||||||||| |||| || | |||||| ||||||||||||| |||| ||||    
T  45451627 gacatgtgtcgtgtccgacaccgacacatattattatactgaagtatgtgattttctcaaattatta 45451561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 154
Target Start/End: Original strand, 10690266 - 10690303
Alignment:
Q  117 accgacatatataataacactgaattatgtgattttct 154  Q
    ||||||| ||||||| ||||||||||||||||||||||    
T  10690266 accgacaaatataattacactgaattatgtgattttct 10690303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 178
Target Start/End: Original strand, 13845485 - 13845590
Alignment:
Q  73 ttggattaggcgtgtcatggtgtttgacatgtgtcgtatccaacaccgacatatataataacactgaattatgtgattttcttaaataattaacgatgtc 172  Q
    |||||| |||||||||   ||||  |||| || |||| ||| ||||||||| ||||||| |||||| ||| ||||||||||| ||| | |||||  ||||    
T  13845485 ttggataaggcgtgtctccgtgtcagacacgtctcgtgtccgacaccgacacatataattacactgcattttgtgattttctaaaaaatttaactgtgtc 13845584  T
Q  173 ggtgtc 178  Q
    ||||||    
T  13845585 ggtgtc 13845590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 152
Target Start/End: Complemental strand, 55401172 - 55401095
Alignment:
Q  75 ggattaggcgtgtcatggtgtttgacatgtgtcgtatccaacaccgacatatataataacactgaattatgtgatttt 152  Q
    ||||||||||||||  |||||  |||| ||||||| ||| |||||||||  | |||| ||||| ||||||||||||||    
T  55401172 ggattaggcgtgtctcggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattacactaaattatgtgatttt 55401095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 177
Target Start/End: Complemental strand, 1438851 - 1438799
Alignment:
Q  125 atataataacactgaattatgtgattttcttaaataattaacgatgtcggtgt 177  Q
    ||||||| | |||||||||||||||||||| ||||  ||| ||||||||||||    
T  1438851 atataattatactgaattatgtgattttctcaaattgttagcgatgtcggtgt 1438799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 154
Target Start/End: Complemental strand, 2941632 - 2941576
Alignment:
Q  98 gacatgtgtcgtatccaacaccgacatatataataacactgaattatgtgattttct 154  Q
    |||| ||||||| ||| ||||||||| ||||||| |||||| ||| |||||||||||    
T  2941632 gacacgtgtcgtgtccgacaccgacacatataattacactgtattttgtgattttct 2941576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 167
Target Start/End: Complemental strand, 4201453 - 4201401
Alignment:
Q  115 acaccgacatatataataacactgaattatgtgattttcttaaataattaacg 167  Q
    ||||| ||||||||||| ||||| |||||||||||||| | |||| |||||||    
T  4201453 acaccaacatatataattacacttaattatgtgattttttcaaattattaacg 4201401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 167
Target Start/End: Original strand, 21419457 - 21419509
Alignment:
Q  115 acaccgacatatataataacactgaattatgtgattttcttaaataattaacg 167  Q
    ||||| ||||||||||| ||| |||||||| | |||||||||||| |||||||    
T  21419457 acaccaacatatataattacattgaattatattattttcttaaattattaacg 21419509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 174
Target Start/End: Complemental strand, 28918102 - 28917999
Alignment:
Q  73 ttggattaggcgtgtcatggtgtttgacatgtgtcgtatcca--acaccgacatatataataacactgaattatgtgattttcttaaataattaacgatg 170  Q
    ||||||||||||||||   ||||  |||| ||||||| ||||  |||||||||  | |||| |||||||||||||||||||| | |||| |||| | |||    
T  28918102 ttggattaggcgtgtcccagtgtcggacacgtgtcgtgtccacgacaccgacacttgtaattacactgaattatgtgattttttcaaattattagctatg 28918003  T
Q  171 tcgg 174  Q
    ||||    
T  28918002 tcgg 28917999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 154
Target Start/End: Complemental strand, 35223012 - 35222956
Alignment:
Q  98 gacatgtgtcgtatccaacaccgacatatataataacactgaattatgtgattttct 154  Q
    |||| ||||| | ||| ||||||||| ||||||| ||| ||||||||||||||||||    
T  35223012 gacacgtgtcatgtccgacaccgacacatataattacattgaattatgtgattttct 35222956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 139; Significance: 7e-73; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 13998048 - 13997824
Alignment:
Q  1 tttctattatttaaacagcaaagtataagatgcacaagcacaatgtgatattatatgaagcatgaatactttttggattaggcgtgtcatggtgtttgac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |      |||||||| ||||||||||||||||||    
T  13998048 tttctattatttaaacagcaaagtataagatgcacaagcacaatgtgatattatatggagtatgact------tggattagacgtgtcatggtgtttgac 13997955  T
Q  101 atgtgtcgtatccaacaccgacatatataataacactgaattatgtgattttcttaaataattaacgatgtcg--------gtgtctggtatccatgtcc 192  Q
    ||||||||| ||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||| |||||        |||||||||||||||||||    
T  13997954 atgtgtcgtctccaacaccgacacatataattacactgaattatgtgatttttttaaataattaacggtgtcggcgtgtcagtgtctggtatccatgtcc 13997855  T
Q  193 gtatttatccttcatgggtgatattgcattt 223  Q
    |||||| ||||||||||||||||||||||||    
T  13997854 gtatttgtccttcatgggtgatattgcattt 13997824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 48 - 152
Target Start/End: Original strand, 38078596 - 38078700
Alignment:
Q  48 atattatatgaagcatgaatactttttggattaggcgtgtcatggtgtttgacatgtgtcgtatccaacaccgacatatataataacactgaattatgtg 147  Q
    ||||| ||||||||| |||||||  | |||||||||||||| |||||||  ||||||||||| ||| |||||||||  | |||| ||| |||||||||||    
T  38078596 atattctatgaagcacgaatactcctcggattaggcgtgtcctggtgttgaacatgtgtcgtgtccgacaccgacacttgtaattacattgaattatgtg 38078695  T
Q  148 atttt 152  Q
    |||||    
T  38078696 atttt 38078700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 111 - 177
Target Start/End: Original strand, 1864878 - 1864944
Alignment:
Q  111 tccaacaccgacatatataataacactgaattatgtgattttcttaaataattaacgatgtcggtgt 177  Q
    ||||||||||||| ||||||| |||||||||||||||||||||| |||| ||||||  |||||||||    
T  1864878 tccaacaccgacacatataattacactgaattatgtgattttctcaaattattaactgtgtcggtgt 1864944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 54 - 152
Target Start/End: Complemental strand, 51410143 - 51410045
Alignment:
Q  54 tatgaagcatgaatactttttggattaggcgtgtcatggtgtttgacatgtgtcgtatccaacaccgacatatataataacactgaattatgtgatttt 152  Q
    ||||||||| |||||||  ||||||||||||||||  |||||  || | ||||||| ||| |||||||||  | |||| ||||||||||||||||||||    
T  51410143 tatgaagcacgaatactccttggattaggcgtgtctcggtgtcggatacgtgtcgtgtccgacaccgacacttgtaattacactgaattatgtgatttt 51410045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 75 - 164
Target Start/End: Complemental strand, 40181968 - 40181879
Alignment:
Q  75 ggattaggcgtgtcatggtgtttgacatgtgtcgtatccaacaccgacatatataataacactgaattatgtgattttcttaaataatta 164  Q
    ||||||||||||||  |||||  |||| |||| || ||| ||||||| | ||||||| |||||||||||||||||||||| |||| ||||    
T  40181968 ggattaggcgtgtcccggtgtaggacacgtgttgtgtccgacaccgatacatataattacactgaattatgtgattttctcaaattatta 40181879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 76 - 164
Target Start/End: Complemental strand, 1815353 - 1815265
Alignment:
Q  76 gattaggcgtgtcatggtgtttgacatgtgtcgtatccaacaccgacatatataataacactgaattatgtgattttcttaaataatta 164  Q
    |||||||||||||  |||||  |||||||||||| ||  |||||||||  | |||| |||||||||||||||||||| | |||||||||    
T  1815353 gattaggcgtgtcccggtgtcggacatgtgtcgtgtcggacaccgacacttgtaattacactgaattatgtgattttttaaaataatta 1815265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 71 - 167
Target Start/End: Complemental strand, 28674901 - 28674805
Alignment:
Q  71 ttttggattaggcgtgtcatggtgtttgacatgtgtcgtatccaacaccgacatatataataacactgaattatgtgattttcttaaataattaacg 167  Q
    |||| |||||||||||||   ||||| |||| ||||||| ||  ||||| ||||||||||| | |||||||||||| ||||||| |||| |||||||    
T  28674901 ttttagattaggcgtgtctcagtgttggacaagtgtcgtgtctgacaccaacatatataattatactgaattatgtaattttctcaaattattaacg 28674805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 117 - 173
Target Start/End: Original strand, 34257914 - 34257970
Alignment:
Q  117 accgacatatataataacactgaattatgtgattttcttaaataattaacgatgtcg 173  Q
    ||||||||||||||| ||||| |||||||||||||| |||||| ||||||| |||||    
T  34257914 accgacatatataattacactaaattatgtgattttattaaattattaacggtgtcg 34257970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 54 - 178
Target Start/End: Original strand, 40258874 - 40258998
Alignment:
Q  54 tatgaagcatgaatactttttggattaggcgtgtcatggtgtttgacatgtgtcgtatccaacaccgacatatataataacactgaattatgtgattttc 153  Q
    ||||||||||| | |||  | |||||||||||||| ||||||  |||| ||||||| ||  |||||||||  | |||| ||||||||||||||||||||     
T  40258874 tatgaagcatggacactcctcggattaggcgtgtcctggtgtcggacaggtgtcgtgtctgacaccgacacttgtaattacactgaattatgtgattttt 40258973  T
Q  154 ttaaataattaacgatgtcggtgtc 178  Q
    | |||| |||||   ||||||||||    
T  40258974 tcaaattattaattgtgtcggtgtc 40258998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 176
Target Start/End: Complemental strand, 2784613 - 2784552
Alignment:
Q  115 acaccgacatatataataacactgaattatgtgattttcttaaataattaacgatgtcggtg 176  Q
    ||||||||| ||||||| | ||| |||||||||||||||||||||  |||||| ||||||||    
T  2784613 acaccgacacatataattatactcaattatgtgattttcttaaatttttaacggtgtcggtg 2784552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 152
Target Start/End: Original strand, 5898228 - 5898305
Alignment:
Q  75 ggattaggcgtgtcatggtgtttgacatgtgtcgtatccaacaccgacatatataataacactgaattatgtgatttt 152  Q
    ||||||| ||||||  |||||| |||| ||||||| ||  ||||||||  ||||||| ||||||||||||||||||||    
T  5898228 ggattagacgtgtcccggtgttggacacgtgtcgtgtctgacaccgacgcatataattacactgaattatgtgatttt 5898305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 174
Target Start/End: Original strand, 2896062 - 2896182
Alignment:
Q  54 tatgaagcatgaatactttttggattaggcgtgtcatggtgtttgacatgtgtcgtatccaacaccgacatatataataacactgaattatgtgattttc 153  Q
    |||||| |||| | |||| |||||||||| |||||  ||| |  ||||  |||||| ||  |||||||||||||||   |||||||||||||||||||||    
T  2896062 tatgaaacatggacacttcttggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattatgtgattttc 2896161  T
Q  154 ttaaataattaacgatgtcgg 174  Q
    | |||| |||| || ||||||    
T  2896162 tcaaattattagcggtgtcgg 2896182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 174
Target Start/End: Complemental strand, 36878535 - 36878459
Alignment:
Q  98 gacatgtgtcgtatccaacaccgacatatataataacactgaattatgtgattttcttaaataattaacgatgtcgg 174  Q
    ||||||| |||| ||  |||||||||  |||||| |||||||||||||||||||||| |||| |||| || ||||||    
T  36878535 gacatgtttcgtgtcagacaccgacacctataattacactgaattatgtgattttctcaaattattagcggtgtcgg 36878459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 159
Target Start/End: Complemental strand, 44482287 - 44482243
Alignment:
Q  115 acaccgacatatataataacactgaattatgtgattttcttaaat 159  Q
    ||||||||| ||||||| |||||||||||||||||||||| ||||    
T  44482287 acaccgacacatataattacactgaattatgtgattttctcaaat 44482243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 167
Target Start/End: Complemental strand, 52903306 - 52903254
Alignment:
Q  115 acaccgacatatataataacactgaattatgtgattttcttaaataattaacg 167  Q
    ||||||||| ||||||| |||||||||||| ||||||| |||||| |||||||    
T  52903306 acaccgacacatataattacactgaattatatgattttattaaattattaacg 52903254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 174
Target Start/End: Original strand, 6415003 - 6415062
Alignment:
Q  115 acaccgacatatataataacactgaattatgtgattttcttaaataattaacgatgtcgg 174  Q
    ||||||||| || |||| | |||| ||||||||||||||| ||||||||| |||||||||    
T  6415003 acaccgacacatctaattaaactgtattatgtgattttctcaaataattagcgatgtcgg 6415062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 154
Target Start/End: Complemental strand, 30749897 - 30749858
Alignment:
Q  115 acaccgacatatataataacactgaattatgtgattttct 154  Q
    ||||||||| ||||||| ||||||||||||||||||||||    
T  30749897 acaccgacacatataattacactgaattatgtgattttct 30749858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 154
Target Start/End: Complemental strand, 30771348 - 30771309
Alignment:
Q  115 acaccgacatatataataacactgaattatgtgattttct 154  Q
    ||||||||| ||||||| ||||||||||||||||||||||    
T  30771348 acaccgacacatataattacactgaattatgtgattttct 30771309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 154
Target Start/End: Complemental strand, 34371770 - 34371731
Alignment:
Q  115 acaccgacatatataataacactgaattatgtgattttct 154  Q
    ||||||||| ||||||| ||||||||||||||||||||||    
T  34371770 acaccgacacatataattacactgaattatgtgattttct 34371731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 158
Target Start/End: Original strand, 48148039 - 48148082
Alignment:
Q  115 acaccgacatatataataacactgaattatgtgattttcttaaa 158  Q
    ||||||||||||||||| |||||||||||| ||||||| |||||    
T  48148039 acaccgacatatataattacactgaattatatgatttttttaaa 48148082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 154
Target Start/End: Complemental strand, 10233313 - 10233271
Alignment:
Q  112 ccaacaccgacatatataataacactgaattatgtgattttct 154  Q
    ||||||| |||| ||||||| ||||||||||||||||||||||    
T  10233313 ccaacacagacacatataattacactgaattatgtgattttct 10233271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 164
Target Start/End: Original strand, 7918213 - 7918262
Alignment:
Q  115 acaccgacatatataataacactgaattatgtgattttcttaaataatta 164  Q
    |||| |||| ||||||| |||||||||||||||||||||| |||| ||||    
T  7918213 acactgacacatataattacactgaattatgtgattttctcaaattatta 7918262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 164
Target Start/End: Complemental strand, 13436515 - 13436466
Alignment:
Q  115 acaccgacatatataataacactgaattatgtgattttcttaaataatta 164  Q
    ||||| ||| ||||||| ||||||||||||||||||| ||||||| ||||    
T  13436515 acaccaacacatataattacactgaattatgtgatttccttaaattatta 13436466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 152
Target Start/End: Original strand, 22515849 - 22515926
Alignment:
Q  75 ggattaggcgtgtcatggtgtttgacatgtgtcgtatccaacaccgacatatataataacactgaattatgtgatttt 152  Q
    ||||||||||||||  |||||  || ||||||||| ||| |||||||||  | |||| ||||| ||||||||||||||    
T  22515849 ggattaggcgtgtctcggtgtcggatatgtgtcgtgtccgacaccgacacttgtaattacactaaattatgtgatttt 22515926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 174
Target Start/End: Complemental strand, 21530763 - 21530687
Alignment:
Q  98 gacatgtgtcgtatccaacaccgacatatataataacactgaattatgtgattttcttaaataattaacgatgtcgg 174  Q
    |||||||||||| ||| |||||||||  |||||| | ||  |||||| ||||||||| |||| ||||||| ||||||    
T  21530763 gacatgtgtcgtgtccgacaccgacacttataattataccaaattatatgattttctcaaattattaacggtgtcgg 21530687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 159
Target Start/End: Complemental strand, 25361943 - 25361899
Alignment:
Q  115 acaccgacatatataataacactgaattatgtgattttcttaaat 159  Q
    |||| |||| ||||||| |||||||||||||||||||||| ||||    
T  25361943 acactgacacatataattacactgaattatgtgattttctcaaat 25361899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 159
Target Start/End: Original strand, 29163371 - 29163427
Alignment:
Q  103 gtgtcgtatccaacaccgacatatataataacactgaattatgtgattttcttaaat 159  Q
    ||||||| ||| ||||||||| ||||||| | | ||||||||||||||||| |||||    
T  29163371 gtgtcgtgtccgacaccgacacatataattaaattgaattatgtgattttcctaaat 29163427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 9e-20; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 68 - 177
Target Start/End: Complemental strand, 31808181 - 31808072
Alignment:
Q  68 actttttggattaggcgtgtcatggtgtttgacatgtgtcgtatccaacaccgacatatataataacactgaattatgtgattttcttaaataattaacg 167  Q
    ||||||||||||||| |||||  |||||   ||||||||||| | |||||| |||| ||||||| |||||||||||||||||||| |||||| |||| ||    
T  31808181 actttttggattaggtgtgtccaggtgtcgaacatgtgtcgtgttcaacactgacacatataattacactgaattatgtgattttgttaaattattagcg 31808082  T
Q  168 atgtcggtgt 177  Q
     |||||||||    
T  31808081 gtgtcggtgt 31808072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 73 - 164
Target Start/End: Complemental strand, 5367291 - 5367200
Alignment:
Q  73 ttggattaggcgtgtcatggtgtttgacatgtgtcgtatccaacaccgacatatataataacactgaattatgtgattttcttaaataatta 164  Q
    ||||||||||||||||  || ||  || ||||||||| ||| ||||||||| ||||||| ||||||||||||||||||| || |||| ||||    
T  5367291 ttggattaggcgtgtcccggagtcggatatgtgtcgtgtccgacaccgacacatataattacactgaattatgtgatttcctcaaattatta 5367200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 75 - 152
Target Start/End: Original strand, 2438681 - 2438758
Alignment:
Q  75 ggattaggcgtgtcatggtgtttgacatgtgtcgtatccaacaccgacatatataataacactgaattatgtgatttt 152  Q
    ||||||||||||||  |||||  |||||||||||| ||| |||||||||  | |||| ||||||||||||||||||||    
T  2438681 ggattaggcgtgtcccggtgtcggacatgtgtcgtgtccgacaccgacacttgtaattacactgaattatgtgatttt 2438758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 75 - 164
Target Start/End: Original strand, 20242689 - 20242778
Alignment:
Q  75 ggattaggcgtgtcatggtgtttgacatgtgtcgtatccaacaccgacatatataataacactgaattatgtgattttcttaaataatta 164  Q
    |||| ||||||||| | ||||  |||| |||| || ||| ||||||||| ||||||| |||||||||||||||||||||| ||| |||||    
T  20242689 ggataaggcgtgtcctcgtgtcagacacgtgttgtgtccgacaccgacacatataattacactgaattatgtgattttctaaaaaaatta 20242778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 76 - 166
Target Start/End: Original strand, 30404813 - 30404903
Alignment:
Q  76 gattaggcgtgtcatggtgtttgacatgtgtcgtatccaacaccgacatatataataacactgaattatgtgattttcttaaataattaac 166  Q
    |||||||| |||| ||||||  |||||||||||| ||| || ||||||  | |||| |||||||||||||||||||| | |||| ||||||    
T  30404813 gattaggcatgtcctggtgtcggacatgtgtcgtgtccgacgccgacacttgtaattacactgaattatgtgattttttcaaattattaac 30404903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 115 - 161
Target Start/End: Original strand, 38355889 - 38355935
Alignment:
Q  115 acaccgacatatataataacactgaattatgtgattttcttaaataa 161  Q
    ||||||||| ||||||| |||||||||||||||||||||| ||||||    
T  38355889 acaccgacacatataatcacactgaattatgtgattttctcaaataa 38355935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 177
Target Start/End: Complemental strand, 23718082 - 23718021
Alignment:
Q  116 caccgacatatataataacactgaattatgtgattttcttaaataattaacgatgtcggtgt 177  Q
    |||||||| ||||||| |||||||||||||||| ||||| |||| |||| || |||||||||    
T  23718082 caccgacacatataattacactgaattatgtgactttctcaaattattagcggtgtcggtgt 23718021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 177
Target Start/End: Complemental strand, 24105754 - 24105693
Alignment:
Q  116 caccgacatatataataacactgaattatgtgattttcttaaataattaacgatgtcggtgt 177  Q
    |||||||| ||||||| |||||||||||||||| ||||| |||| |||| || |||||||||    
T  24105754 caccgacacatataattacactgaattatgtgactttctcaaattattagcggtgtcggtgt 24105693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 174
Target Start/End: Original strand, 37411250 - 37411305
Alignment:
Q  119 cgacatatataataacactgaattatgtgattttcttaaataattaacgatgtcgg 174  Q
    ||||| ||||||| |||||||||||||||||||||| |||| |||| || ||||||    
T  37411250 cgacacatataatcacactgaattatgtgattttctcaaattattagcggtgtcgg 37411305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 167
Target Start/End: Complemental strand, 39279735 - 39279680
Alignment:
Q  112 ccaacaccgacatatataataacactgaattatgtgattttcttaaataattaacg 167  Q
    |||||||||||| ||||||| |||||||||||| ||||||||| | || |||||||    
T  39279735 ccaacaccgacacatataattacactgaattatttgattttctcatattattaacg 39279680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 178
Target Start/End: Complemental strand, 44860377 - 44860314
Alignment:
Q  115 acaccgacatatataataacactgaattatgtgattttcttaaataattaacgatgtcggtgtc 178  Q
    ||||||||| ||||||| ||||||||||||| |||||||| |||| |||| || |||| |||||    
T  44860377 acaccgacacatataattacactgaattatgcgattttctcaaattattagcggtgtcagtgtc 44860314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 174
Target Start/End: Complemental strand, 21616809 - 21616760
Alignment:
Q  125 atataataacactgaattatgtgattttcttaaataattaacgatgtcgg 174  Q
    ||||||| |||||||||||||||||||||| |||| |||| || ||||||    
T  21616809 atataattacactgaattatgtgattttctcaaattattagcggtgtcgg 21616760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 164
Target Start/End: Complemental strand, 31026752 - 31026703
Alignment:
Q  115 acaccgacatatataataacactgaattatgtgattttcttaaataatta 164  Q
    |||||||||||||| || ||| |||||||||| |||||||||||| ||||    
T  31026752 acaccgacatatatgattacattgaattatgtcattttcttaaattatta 31026703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 164
Target Start/End: Original strand, 34784984 - 34785033
Alignment:
Q  115 acaccgacatatataataacactgaattatgtgattttcttaaataatta 164  Q
    ||||||||| ||||||| ||||| |||||||||||||||| ||| |||||    
T  34784984 acaccgacacatataattacactaaattatgtgattttctaaaaaaatta 34785033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 174
Target Start/End: Complemental strand, 19574024 - 19573976
Alignment:
Q  126 tataataacactgaattatgtgattttcttaaataattaacgatgtcgg 174  Q
    |||||| |||||||||||||| |||||||||||| |||| || ||||||    
T  19574024 tataattacactgaattatgttattttcttaaattattatcggtgtcgg 19573976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 148
Target Start/End: Original strand, 29176448 - 29176528
Alignment:
Q  68 actttttggattaggcgtgtcatggtgtttgacatgtgtcgtatccaacaccgacatatataataacactgaattatgtga 148  Q
    |||| |||||||||| |||||   ||||  |||||||| ||| ||||||||| |||  |||||| ||||||||||||||||    
T  29176448 acttcttggattaggtgtgtctcagtgtcggacatgtgccgtgtccaacaccaacacttataattacactgaattatgtga 29176528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 54 - 174
Target Start/End: Original strand, 28588615 - 28588735
Alignment:
Q  54 tatgaagcatgaatactttttggattaggcgtgtcatggtgtttgacatgtgtcgtatccaacaccgacatatataataacactgaattatgtgattttc 153  Q
    ||||||||||| | ||| || |||||| ||||||| ||||||  || ||||||||| ||| |||||||||  |||||| |||||||||||||||||||||    
T  28588615 tatgaagcatggacactcttcggattaagcgtgtcctggtgtcagatatgtgtcgtgtccgacaccgacacctataattacactgaattatgtgattttc 28588714  T
Q  154 ttaaataattaacgatgtcgg 174  Q
    | |||| |||| || ||||||    
T  28588715 tcaaattattaccggtgtcgg 28588735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 73 - 164
Target Start/End: Original strand, 30502348 - 30502439
Alignment:
Q  73 ttggattaggcgtgtcatggtgtttgacatgtgtcgtatccaacaccgacatatataataacactgaattatgtgattttcttaaataatta 164  Q
    ||||||||||| ||||   ||||  |||||||||||| ||| ||||||||| ||||||| ||||||||||| |||||||||| |||| ||||    
T  30502348 ttggattaggcatgtcccagtgtcggacatgtgtcgtgtccgacaccgacacatataattacactgaattaagtgattttctcaaattatta 30502439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 73 - 164
Target Start/End: Original strand, 30542691 - 30542782
Alignment:
Q  73 ttggattaggcgtgtcatggtgtttgacatgtgtcgtatccaacaccgacatatataataacactgaattatgtgattttcttaaataatta 164  Q
    ||||||||||| ||||   ||||  |||||||||||| ||| ||||||||| ||||||| ||||||||||| |||||||||| |||| ||||    
T  30542691 ttggattaggcatgtcccagtgtcggacatgtgtcgtgtccgacaccgacacatataattacactgaattaagtgattttctcaaattatta 30542782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 75 - 159
Target Start/End: Original strand, 21194085 - 21194169
Alignment:
Q  75 ggattaggcgtgtcatggtgtttgacatgtgtcgtatccaacaccgacatatataataacactgaattatgtgattttcttaaat 159  Q
    |||||||||||| |  ||||| ||||||||||||| ||||||||| | |  |||||| ||||||||| |||||||||||| ||||    
T  21194085 ggattaggcgtgccccggtgtctgacatgtgtcgtgtccaacaccaatacctataattacactgaatgatgtgattttctcaaat 21194169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 177
Target Start/End: Original strand, 23012393 - 23012471
Alignment:
Q  98 gacatgtgtcgtatccaacaccgacatatataataacactgaattatgtgattttcttaaataattaacgatgtcggtgt 177  Q
    |||||||||||| ||||||||||||| ||||||| ||| | |||||| ||||||||| |||| |||| | ||||||||||    
T  23012393 gacatgtgtcgtgtccaacaccgacacatataattacattaaattatatgattttctcaaattattagc-atgtcggtgt 23012471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 172
Target Start/End: Original strand, 23015989 - 23016048
Alignment:
Q  113 caacaccgacatatataataacactgaattatgtgattttcttaaataattaacgatgtc 172  Q
    ||||| |||||  |||||| |||||||||||||||||||||| |||| ||||||||||||    
T  23015989 caacatcgacacctataattacactgaattatgtgattttctcaaatgattaacgatgtc 23016048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 115 - 177
Target Start/End: Complemental strand, 12927711 - 12927649
Alignment:
Q  115 acaccgacatatataataacactgaattatgtgattttcttaaataattaacgatgtcggtgt 177  Q
    |||| |||||||||||| ||||| |||||| ||||||||| |||| |||| ||||||||||||    
T  12927711 acactgacatatataattacactaaattatatgattttctcaaattattagcgatgtcggtgt 12927649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 159
Target Start/End: Original strand, 18421826 - 18421887
Alignment:
Q  98 gacatgtgtcgtatccaacaccgacatatataataacactgaattatgtgattttcttaaat 159  Q
    |||||||||||| ||| || |||||| ||||||| |||||| ||||||||||||||| ||||    
T  18421826 gacatgtgtcgtgtccgacgccgacacatataattacactggattatgtgattttctcaaat 18421887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 174
Target Start/End: Complemental strand, 27932330 - 27932233
Alignment:
Q  77 attaggcgtgtcatggtgtttgacatgtgtcgtatccaacaccgacatatataataacactgaattatgtgattttcttaaataattaacgatgtcgg 174  Q
    |||||||||||| ||||||  |||| ||||||| ||| ||||| | || | |||| |||||||||||||| ||||||| |||| |||| || ||||||    
T  27932330 attaggcgtgtcctggtgtccgacacgtgtcgtgtccgacaccaagatttgtaattacactgaattatgtaattttctcaaattattagcggtgtcgg 27932233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 154
Target Start/End: Complemental strand, 42029826 - 42029770
Alignment:
Q  98 gacatgtgtcgtatccaacaccgacatatataataacactgaattatgtgattttct 154  Q
    |||||||||||| ||| ||||||| | ||||||| ||| ||||||||||||||||||    
T  42029826 gacatgtgtcgtgtccgacaccgatacatataattacattgaattatgtgattttct 42029770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 174
Target Start/End: Complemental strand, 3966560 - 3966501
Alignment:
Q  115 acaccgacatatataataacactgaattatgtgattttcttaaataattaacgatgtcgg 174  Q
    ||||||||| ||||||| |||||||||| ||||||||||| |||| |||| || ||||||    
T  3966560 acaccgacacatataattacactgaattgtgtgattttctcaaattattagcggtgtcgg 3966501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 164
Target Start/End: Complemental strand, 17123122 - 17123056
Alignment:
Q  98 gacatgtgtcgtatccaacaccgacatatataataacactgaattatgtgattttcttaaataatta 164  Q
    ||||||| |||| |||||||||||||||||||||   |||  ||||||||||||||| |||| ||||    
T  17123122 gacatgtttcgtgtccaacaccgacatatataattgtacttgattatgtgattttctcaaattatta 17123056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 173
Target Start/End: Complemental strand, 23221044 - 23220982
Alignment:
Q  111 tccaacaccgacatatataataacactgaattatgtgattttcttaaataattaacgatgtcg 173  Q
    ||||||||||||| |||| |||||||| |||||||||||||| | |||| |||| || |||||    
T  23221044 tccaacaccgacacatatgataacactaaattatgtgattttatcaaattattagcggtgtcg 23220982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 167
Target Start/End: Complemental strand, 30098381 - 30098331
Alignment:
Q  117 accgacatatataataacactgaattatgtgattttcttaaataattaacg 167  Q
    |||||||| |||||| ||| |||||||||||||||||| |||| |||||||    
T  30098381 accgacatctataattacattgaattatgtgattttctcaaattattaacg 30098331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 164
Target Start/End: Original strand, 6471891 - 6471940
Alignment:
Q  115 acaccgacatatataataacactgaattatgtgattttcttaaataatta 164  Q
    ||||| ||| ||||||| |||||||||||||||||||||| |||| ||||    
T  6471891 acacccacacatataattacactgaattatgtgattttctcaaattatta 6471940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 164
Target Start/End: Original strand, 17925174 - 17925223
Alignment:
Q  115 acaccgacatatataataacactgaattatgtgattttcttaaataatta 164  Q
    ||||||||| |||| || ||| ||||||||||||||||||||||| ||||    
T  17925174 acaccgacacatattattacattgaattatgtgattttcttaaattatta 17925223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 164
Target Start/End: Original strand, 22423814 - 22423863
Alignment:
Q  115 acaccgacatatataataacactgaattatgtgattttcttaaataatta 164  Q
    ||||||||||||||||| | | |||||||||||||||||| |||| ||||    
T  22423814 acaccgacatatataattatattgaattatgtgattttctcaaattatta 22423863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 150
Target Start/End: Original strand, 30098998 - 30099075
Alignment:
Q  73 ttggattaggcgtgtcatggtgtttgacatgtgtcgtatccaacaccgacatatataataacactgaattatgtgatt 150  Q
    |||||| |||||||||   ||||  |||| ||||||||||| ||||||||| ||||||| |||| |||||||| ||||    
T  30098998 ttggataaggcgtgtccccgtgtcagacacgtgtcgtatccgacaccgacacatataattacacagaattatgcgatt 30099075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 154
Target Start/End: Complemental strand, 39758327 - 39758290
Alignment:
Q  117 accgacatatataataacactgaattatgtgattttct 154  Q
    ||||||| ||||||| ||||||||||||||||||||||    
T  39758327 accgacacatataattacactgaattatgtgattttct 39758290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 164
Target Start/End: Original strand, 41091263 - 41091308
Alignment:
Q  119 cgacatatataataacactgaattatgtgattttcttaaataatta 164  Q
    ||||| ||||||| |||||||||||||||||||||| |||| ||||    
T  41091263 cgacacatataattacactgaattatgtgattttctcaaatcatta 41091308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 123
Target Start/End: Complemental strand, 15382582 - 15382534
Alignment:
Q  75 ggattaggcgtgtcatggtgtttgacatgtgtcgtatccaacaccgaca 123  Q
    ||||||||||||||  |||||  |||||||||||| |||||||||||||    
T  15382582 ggattaggcgtgtcccggtgtcggacatgtgtcgtgtccaacaccgaca 15382534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 17593725 - 17593773
Alignment:
Q  116 caccgacatatataataacactgaattatgtgattttcttaaataatta 164  Q
    |||| ||||||||||| ||||||||||| |||||||||| |||| ||||    
T  17593725 caccaacatatataattacactgaattacgtgattttctcaaattatta 17593773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 159
Target Start/End: Complemental strand, 26312866 - 26312782
Alignment:
Q  75 ggattaggcgtgtcatggtgtttgacatgtgtcgtatccaacaccgacatatataataacactgaattatgtgattttcttaaat 159  Q
    |||||||| ||||| ||||||  |||| || |||| ||| ||||||| | ||||||| |||||||||||  ||||||||| ||||    
T  26312866 ggattaggtgtgtcctggtgtcagacacgtatcgtgtccgacaccgatacatataattacactgaattaattgattttctcaaat 26312782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 104 - 174
Target Start/End: Original strand, 4786329 - 4786399
Alignment:
Q  104 tgtcgtatccaacaccgacatatataataacactgaattatgtgattttcttaaataattaacgatgtcgg 174  Q
    |||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||| ||||| | ||||||    
T  4786329 tgtcgtatccgacaccgacacatataattacactgaattatgtgattttcttaaattattaatggtgtcgg 4786399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 73 - 166
Target Start/End: Original strand, 33405344 - 33405437
Alignment:
Q  73 ttggattaggcgtgtcatggtgtttgacatgtgtcgtatccaacaccgacatatataataacactgaattatgtgattttcttaaataattaac 166  Q
    ||||||||| ||||||  |||||  |||||||||||| ||| ||||||||| ||||||| ||||| ||||||||| |||||| |||| ||||||    
T  33405344 ttggattagccgtgtccaggtgtcagacatgtgtcgtgtccgacaccgacacatataattacactaaattatgtgtttttctcaaattattaac 33405437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 77 - 164
Target Start/End: Complemental strand, 14134794 - 14134707
Alignment:
Q  77 attaggcgtgtcatggtgtttgacatgtgtcgtatccaacaccgacatatataataacactgaattatgtgattttcttaaataatta 164  Q
    |||||||||||| |||||   |||| ||||||| |   ||||||||||||||||| |||||||||||||||||||||| |||| ||||    
T  14134794 attaggcgtgtcctggtgacggacacgtgtcgtgtttgacaccgacatatataattacactgaattatgtgattttctcaaattatta 14134707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 113 - 166
Target Start/End: Complemental strand, 11803318 - 11803265
Alignment:
Q  113 caacaccgacatatataataacactgaattatgtgattttcttaaataattaac 166  Q
    ||||||| ||| ||||||| ||||||||||||||||||||||||||| ||||||    
T  11803318 caacaccaacacatataattacactgaattatgtgattttcttaaattattaac 11803265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 108 - 164
Target Start/End: Complemental strand, 7658527 - 7658471
Alignment:
Q  108 gtatccaacaccgacatatataataacactgaattatgtgattttcttaaataatta 164  Q
    |||||||||||||||| ||||||| |||||||||||||| ||||||| |||| ||||    
T  7658527 gtatccaacaccgacaaatataattacactgaattatgtaattttctcaaattatta 7658471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 178
Target Start/End: Complemental strand, 3025648 - 3025545
Alignment:
Q  75 ggattaggcgtgtcatggtgtttgacatgtgtcgtatccaacaccgacatatataataacactgaattatgtgattttcttaaataattaacgatgtcgg 174  Q
    ||||||| |||||||  ||||  |||| ||||||| ||| |||| ||||  |||||| |||||||||||||||||||||| |||| |||| | ||| |||    
T  3025648 ggattagccgtgtcacagtgtcagacacgtgtcgtgtccgacactgacacctataattacactgaattatgtgattttctcaaattattagcaatgccgg 3025549  T
Q  175 tgtc 178  Q
    ||||    
T  3025548 tgtc 3025545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 152
Target Start/End: Complemental strand, 31557095 - 31557016
Alignment:
Q  73 ttggattaggcgtgtcatggtgtttgacatgtgtcgtatccaacaccgacatatataataacactgaattatgtgatttt 152  Q
    |||||||||||||||| ||||||  |||||||||||| ||  ||||||| |  | |||| ||||||||||||||||||||    
T  31557095 ttggattaggcgtgtcctggtgtcggacatgtgtcgtgtctgacaccgaaacttgtaattacactgaattatgtgatttt 31557016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 159
Target Start/End: Complemental strand, 40332288 - 40332204
Alignment:
Q  75 ggattaggcgtgtcatggtgtttgacatgtgtcgtatccaacaccgacatatataataacactgaattatgtgattttcttaaat 159  Q
    |||||||||| |||  |||||  |||| ||||||| ||| |||||||||  | |||| |||||||||||||||||||||| ||||    
T  40332288 ggattaggcgcgtcccggtgtgggacacgtgtcgtgtcccacaccgacacttgtaattacactgaattatgtgattttctcaaat 40332204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 166
Target Start/End: Original strand, 11927088 - 11927139
Alignment:
Q  115 acaccgacatatataataacactgaattatgtgattttcttaaataattaac 166  Q
    ||||||||| ||||||| |||||||||||||||||||| | |||| ||||||    
T  11927088 acaccgacacatataattacactgaattatgtgattttatcaaattattaac 11927139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 152
Target Start/End: Complemental strand, 22493553 - 22493514
Alignment:
Q  113 caacaccgacatatataataacactgaattatgtgatttt 152  Q
    |||||||||||||||| || ||||||||||||||||||||    
T  22493553 caacaccgacatatatgattacactgaattatgtgatttt 22493514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 154
Target Start/End: Original strand, 26902177 - 26902216
Alignment:
Q  115 acaccgacatatataataacactgaattatgtgattttct 154  Q
    ||||||||| ||||||| ||||||||||||||||||||||    
T  26902177 acaccgacacatataattacactgaattatgtgattttct 26902216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 166
Target Start/End: Original strand, 31580113 - 31580180
Alignment:
Q  99 acatgtgtcgtatccaacaccgacatatataataacactgaattatgtgattttcttaaataattaac 166  Q
    ||||||||||  ||| ||| |||||  |||||| ||||| ||||||||||||||||||||| ||||||    
T  31580113 acatgtgtcgcgtccgacatcgacacctataattacactcaattatgtgattttcttaaattattaac 31580180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 171
Target Start/End: Complemental strand, 34223002 - 34222948
Alignment:
Q  117 accgacatatataataacactgaattatgtgattttcttaaataattaacgatgt 171  Q
    ||||||| ||||||| ||||| |||||||||||||| |||||| |||| ||||||    
T  34223002 accgacacatataattacacttaattatgtgattttattaaattattagcgatgt 34222948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 173
Target Start/End: Complemental strand, 34897138 - 34897084
Alignment:
Q  119 cgacatatataataacactgaattatgtgattttcttaaataattaacgatgtcg 173  Q
    ||||| ||||||| |||||||||||||||||||||| |||| |||| || |||||    
T  34897138 cgacacatataattacactgaattatgtgattttctcaaattattagcggtgtcg 34897084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 177
Target Start/End: Complemental strand, 4611590 - 4611529
Alignment:
Q  116 caccgacatatataataacactgaattatgtgattttcttaaataattaacgatgtcggtgt 177  Q
    |||||| | ||||||| |||||||||||||| ||||||| |||| |||| || |||||||||    
T  4611590 caccgagacatataattacactgaattatgttattttctcaaattattagcggtgtcggtgt 4611529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 164
Target Start/End: Complemental strand, 12985449 - 12985400
Alignment:
Q  115 acaccgacatatataataacactgaattatgtgattttcttaaataatta 164  Q
    |||||||||||||| || ||| |||||||||||||||||| |||| ||||    
T  12985449 acaccgacatatatgattacattgaattatgtgattttctcaaattatta 12985400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 164
Target Start/End: Original strand, 13844598 - 13844647
Alignment:
Q  115 acaccgacatatataataacactgaattatgtgattttcttaaataatta 164  Q
    ||||||||| ||||||| ||||| |||||||||||||||| |||| ||||    
T  13844598 acaccgacacatataattacactcaattatgtgattttctcaaattatta 13844647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 164
Target Start/End: Complemental strand, 18964234 - 18964185
Alignment:
Q  115 acaccgacatatataataacactgaattatgtgattttcttaaataatta 164  Q
    ||||||||| ||||||| ||| |||||||||||||||||| ||| |||||    
T  18964234 acaccgacacatataattacattgaattatgtgattttctaaaaaaatta 18964185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 164
Target Start/End: Original strand, 33382021 - 33382070
Alignment:
Q  115 acaccgacatatataataacactgaattatgtgattttcttaaataatta 164  Q
    ||||||||| ||||||| || ||||||||||| |||||||||||| ||||    
T  33382021 acaccgacacatataattactctgaattatgtcattttcttaaattatta 33382070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 159
Target Start/End: Complemental strand, 38079073 - 38079012
Alignment:
Q  98 gacatgtgtcgtatccaacaccgacatatataataacactgaattatgtgattttcttaaat 159  Q
    |||||| ||||| ||| ||| ||||  ||||||| ||||||||| |||||||||||||||||    
T  38079073 gacatgcgtcgtgtccgacatcgacgcatataattacactgaatcatgtgattttcttaaat 38079012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 171
Target Start/End: Original strand, 38278160 - 38278233
Alignment:
Q  98 gacatgtgtcgtatccaacaccgacatatataataacactgaattatgtgattttcttaaataattaacgatgt 171  Q
    ||||||| |||| ||||||||||| |  |||||| | | | ||||||||||||||||||||| |||| ||||||    
T  38278160 gacatgtatcgtgtccaacaccgatacgtataattatattaaattatgtgattttcttaaattattagcgatgt 38278233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 151
Target Start/End: Complemental strand, 8847313 - 8847277
Alignment:
Q  115 acaccgacatatataataacactgaattatgtgattt 151  Q
    ||||||||| ||||||| |||||||||||||||||||    
T  8847313 acaccgacacatataattacactgaattatgtgattt 8847277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 31236580 - 31236628
Alignment:
Q  116 caccgacatatataataacactgaattatgtgattttcttaaataatta 164  Q
    |||||||| ||||||| ||| |||||||||||||||||| |||| ||||    
T  31236580 caccgacacatataattacattgaattatgtgattttctcaaattatta 31236628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 54 - 172
Target Start/End: Complemental strand, 21880270 - 21880152
Alignment:
Q  54 tatgaagcatgaatactttttggattaggcgtgtcatggtgtttgacatgtgtcgtatccaacaccgacatatataataacactgaattatgtgattttc 153  Q
    ||||||||| | | |||| | |||||||||||||| ||||||  |||||||||||| ||| |||||||||  | |||| |||||||||||||| ||||||    
T  21880270 tatgaagcacggacacttctcggattaggcgtgtcctggtgtcggacatgtgtcgtgtccgacaccgacacttgtaattacactgaattatgtaattttc 21880171  T
Q  154 ttaaataattaacgatgtc 172  Q
    | |||| |||| |||||||    
T  21880170 tcaaattattagcgatgtc 21880152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 66 - 154
Target Start/End: Complemental strand, 39138550 - 39138462
Alignment:
Q  66 atactttttggattaggcgtgtcatggtgtttgacatgtgtcgtatccaacaccgacatatataataacactgaattatgtgattttct 154  Q
    ||||| || |||| |||||||||   ||||| ||||||| |||| ||| ||||||||||||||||| ||||||||||||||||||||||    
T  39138550 atactcttgggataaggcgtgtccccgtgttagacatgtatcgtgtccgacaccgacatatataattacactgaattatgtgattttct 39138462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 98 - 177
Target Start/End: Complemental strand, 20549865 - 20549786
Alignment:
Q  98 gacatgtgtcgtatccaacaccgacatatataataacactgaattatgtgattttcttaaataattaacgatgtcggtgt 177  Q
    ||||||||| || ||| ||||||||| ||||||| ||||||||||| |||||||||| |||| |||| || |||||||||    
T  20549865 gacatgtgttgtgtccgacaccgacacatataattacactgaattacgtgattttctcaaattattagcggtgtcggtgt 20549786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 115 - 174
Target Start/End: Original strand, 22602712 - 22602771
Alignment:
Q  115 acaccgacatatataataacactgaattatgtgattttcttaaataattaacgatgtcgg 174  Q
    ||||||||| ||||||| |||||||||||||||||||||| |||||||| ||| ||||||    
T  22602712 acaccgacacatataattacactgaattatgtgattttctcaaataatttacggtgtcgg 22602771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 75 - 175
Target Start/End: Original strand, 27093375 - 27093475
Alignment:
Q  75 ggattaggcgtgtcatggtgtttgacatgtgtcgtatccaacaccgacatatataataacactgaattatgtgattttcttaaataattaacgatgtcgg 174  Q
    |||||||| ||||| | ||||  ||||  |||||| || |||||||||  ||||||| ||||| ||||||||||||||||||||| |||| || ||||||    
T  27093375 ggattaggtgtgtcctagtgtcggacacatgtcgtgtctaacaccgacgcatataattacactaaattatgtgattttcttaaattattagcggtgtcgg 27093474  T
Q  175 t 175  Q
    |    
T  27093475 t 27093475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 75 - 175
Target Start/End: Complemental strand, 27184926 - 27184826
Alignment:
Q  75 ggattaggcgtgtcatggtgtttgacatgtgtcgtatccaacaccgacatatataataacactgaattatgtgattttcttaaataattaacgatgtcgg 174  Q
    |||||||| ||||| | ||||  ||||  |||||| || |||||||||  ||||||| ||||| ||||||||||||||||||||| |||| || ||||||    
T  27184926 ggattaggtgtgtcctagtgtcggacacatgtcgtgtctaacaccgacgcatataattacactaaattatgtgattttcttaaattattagcggtgtcgg 27184827  T
Q  175 t 175  Q
    |    
T  27184826 t 27184826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 72 - 152
Target Start/End: Complemental strand, 41020596 - 41020516
Alignment:
Q  72 tttggattaggcgtgtcatggtgtttgacatgtgtcgtatccaacaccgacatatataataacactgaattatgtgatttt 152  Q
    |||||||||| ||||||  |||||| || ||||||||| | ||||||||||  ||||||| ||||| ||||||||||||||    
T  41020596 tttggattagacgtgtcccggtgttagatatgtgtcgtgttcaacaccgacgcatataattacactaaattatgtgatttt 41020516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 172
Target Start/End: Original strand, 27732243 - 27732298
Alignment:
Q  117 accgacatatataataacactgaattatgtgattttcttaaataattaacgatgtc 172  Q
    ||||||| ||||||| |||||||||||||| |||||||||||| ||||||| ||||    
T  27732243 accgacacatataattacactgaattatgtaattttcttaaattattaacgttgtc 27732298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 115 - 177
Target Start/End: Complemental strand, 9482991 - 9482929
Alignment:
Q  115 acaccgacatatataataacactgaattatgtgattttcttaaataattaacgatgtcggtgt 177  Q
    ||||||||| ||||||| |||||||||| ||||||||||| |||| || | ||||||||||||    
T  9482991 acaccgacacatataattacactgaattgtgtgattttctcaaattatcagcgatgtcggtgt 9482929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 151
Target Start/End: Complemental strand, 640183 - 640134
Alignment:
Q  102 tgtgtcgtatccaacaccgacatatataataacactgaattatgtgattt 151  Q
    |||||||||||  ||||||||| ||||||| |||||||||||||||||||    
T  640183 tgtgtcgtatctgacaccgacacatataattacactgaattatgtgattt 640134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 174
Target Start/End: Original strand, 26329387 - 26329443
Alignment:
Q  118 ccgacatatataataacactgaattatgtgattttcttaaataattaacgatgtcgg 174  Q
    |||||| ||||||| |||||||||| |||| |||||| |||| ||||||||||||||    
T  26329387 ccgacacatataattacactgaattgtgtgtttttctcaaattattaacgatgtcgg 26329443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 159
Target Start/End: Original strand, 3554485 - 3554552
Alignment:
Q  92 gtgtttgacatgtgtcgtatccaacaccgacatatataataacactgaattatgtgattttcttaaat 159  Q
    ||||| || ||||||||| ||| |||||||||| |||||| ||| | |||||||| ||||||||||||    
T  3554485 gtgttagatatgtgtcgtgtccgacaccgacatctataattacattaaattatgtaattttcttaaat 3554552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 148
Target Start/End: Complemental strand, 33994311 - 33994236
Alignment:
Q  73 ttggattaggcgtgtcatggtgtttgacatgtgtcgtatccaacaccgacatatataataacactgaattatgtga 148  Q
    ||||||||||||||||  |||||| |||||||||||| ||  |||||||||  | ||||  |||||||||||||||    
T  33994311 ttggattaggcgtgtctcggtgttggacatgtgtcgtgtctgacaccgacacttgtaattgcactgaattatgtga 33994236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 164
Target Start/End: Complemental strand, 17851489 - 17851439
Alignment:
Q  114 aacaccgacatatataataacactgaattatgtgattttcttaaataatta 164  Q
    ||||| |||| ||||||| |||||||||||||||||||||| |||| ||||    
T  17851489 aacacagacacatataattacactgaattatgtgattttctaaaattatta 17851439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 164
Target Start/End: Complemental strand, 12278888 - 12278843
Alignment:
Q  119 cgacatatataataacactgaattatgtgattttcttaaataatta 164  Q
    ||||| ||||||| |||||||||||||| |||||||||||| ||||    
T  12278888 cgacacatataattacactgaattatgtcattttcttaaattatta 12278843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 174
Target Start/End: Complemental strand, 15680904 - 15680807
Alignment:
Q  77 attaggcgtgtcatggtgtttgacatgtgtcgtatccaacaccgacatatataataacactgaattatgtgattttcttaaataattaacgatgtcgg 174  Q
    ||||| ||||||  |||||  |||| ||||||| ||| |||||||||  |||||| ||||| |||||||||||||| || ||| |||| | |||||||    
T  15680904 attagacgtgtctcggtgtcggacacgtgtcgtgtccgacaccgacacttataattacactaaattatgtgattttttttaattattagctatgtcgg 15680807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 154
Target Start/End: Original strand, 18213025 - 18213074
Alignment:
Q  105 gtcgtatccaacaccgacatatataataacactgaattatgtgattttct 154  Q
    ||||| ||| ||||||||| ||||||| ||||| ||||||||||||||||    
T  18213025 gtcgtgtccgacaccgacacatataattacactaaattatgtgattttct 18213074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 164
Target Start/End: Original strand, 23849460 - 23849509
Alignment:
Q  115 acaccgacatatataataacactgaattatgtgattttcttaaataatta 164  Q
    ||||||||| ||||||| | ||||||||||||| ||||||||||| ||||    
T  23849460 acaccgacacatataattatactgaattatgtgtttttcttaaattatta 23849509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 169
Target Start/End: Original strand, 24625237 - 24625285
Alignment:
Q  121 acatatataataacactgaattatgtgattttcttaaataattaacgat 169  Q
    ||||||||||||||||| |||| | |||||||||||||| || ||||||    
T  24625237 acatatataataacactaaattttatgattttcttaaattatcaacgat 24625285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 58 - 152
Target Start/End: Original strand, 40179581 - 40179675
Alignment:
Q  58 aagcatgaatactttttggattaggcgtgtcatggtgtttgacatgtgtcgtatccaacaccgacatatataataacactgaattatgtgatttt 152  Q
    ||||| ||||| || | |||||||||||||||||||||   ||||||||||| ||| ||||||||  ||||||| ||||||||||||||||||||    
T  40179581 aagcacgaataattctcggattaggcgtgtcatggtgtcgaacatgtgtcgtgtccgacaccgacgcatataattacactgaattatgtgatttt 40179675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 76 - 180
Target Start/End: Original strand, 8423681 - 8423785
Alignment:
Q  76 gattaggcgtgtcatggtgtttgacatgtgtcgtatccaacaccgacatatataataacactgaattatgtgattttcttaaataattaacgatgtcggt 175  Q
    |||||||||||||  |||||  ||||  |||||| ||| |||||||||| |||||| |||||||||||||||||||||| |||| |||| || |||||||    
T  8423681 gattaggcgtgtcccggtgtcggacagctgtcgtgtccgacaccgacatttataattacactgaattatgtgattttctcaaattattagcggtgtcggt 8423780  T
Q  176 gtctg 180  Q
     ||||    
T  8423781 atctg 8423785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 54 - 177
Target Start/End: Original strand, 23861370 - 23861495
Alignment:
Q  54 tatgaagcatgaatactttttggattaggcgtgtcatggtgtttgacatgtgtcgtatccaacaccg--acatatataataacactgaattatgtgattt 151  Q
    ||||||||| ||| ||| |||| |||||||||||| |||||   |||||||||||||||  ||||||  ||||||||||| ||| ||||| |||||||||    
T  23861370 tatgaagcacgaacactctttgaattaggcgtgtcttggtgacagacatgtgtcgtatctgacaccgacacatatataattacattgaatcatgtgattt 23861469  T
Q  152 tcttaaataattaacgatgtcggtgt 177  Q
    | | || | |||| || |||||||||    
T  23861470 tatcaatttattagcggtgtcggtgt 23861495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 98 - 152
Target Start/End: Complemental strand, 29205518 - 29205464
Alignment:
Q  98 gacatgtgtcgtatccaacaccgacatatataataacactgaattatgtgatttt 152  Q
    |||||||||||| |||||||||||||  | |||| ||||||||||||||||||||    
T  29205518 gacatgtgtcgtgtccaacaccgacacttgtaattacactgaattatgtgatttt 29205464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 152
Target Start/End: Complemental strand, 49431123 - 49431046
Alignment:
Q  75 ggattaggcgtgtcatggtgtttgacatgtgtcgtatccaacaccgacatatataataacactgaattatgtgatttt 152  Q
    |||| |||||||||  |||||| |||| ||||||| ||| |||||||||  | |||| ||||||||||||||||||||    
T  49431123 ggataaggcgtgtcccggtgttggacacgtgtcgtgtccgacaccgacacttttaattacactgaattatgtgatttt 49431046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 177
Target Start/End: Complemental strand, 903969 - 903917
Alignment:
Q  125 atataataacactgaattatgtgattttcttaaataattaacgatgtcggtgt 177  Q
    ||||||| |||||||||||||||||||||| |||| ||||||| || ||||||    
T  903969 atataattacactgaattatgtgattttctcaaattattaacggtgccggtgt 903917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 173
Target Start/End: Original strand, 22440612 - 22440660
Alignment:
Q  125 atataataacactgaattatgtgattttcttaaataattaacgatgtcg 173  Q
    ||||||| |||||||||||||||||||||| |||| ||||||| |||||    
T  22440612 atataattacactgaattatgtgattttctcaaattattaacggtgtcg 22440660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 164
Target Start/End: Original strand, 30522923 - 30522966
Alignment:
Q  121 acatatataataacactgaattatgtgattttcttaaataatta 164  Q
    ||||||||| | |||||||||||||||||||||| |||||||||    
T  30522923 acatatatagttacactgaattatgtgattttctcaaataatta 30522966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 154
Target Start/End: Complemental strand, 46160953 - 46160914
Alignment:
Q  115 acaccgacatatataataacactgaattatgtgattttct 154  Q
    ||||||||| |||||||||||||||||||||| |||||||    
T  46160953 acaccgacacatataataacactgaattatgttattttct 46160914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 165
Target Start/End: Original strand, 5775360 - 5775410
Alignment:
Q  115 acaccgacatatataataacactgaattatgtgattttcttaaataattaa 165  Q
    ||||||||| ||||||| ||||| |||||||||||||||| |||| |||||    
T  5775360 acaccgacacatataattacacttaattatgtgattttctcaaattattaa 5775410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 152
Target Start/End: Complemental strand, 16073512 - 16073414
Alignment:
Q  54 tatgaagcatgaatactttttggattaggcgtgtcatggtgtttgacatgtgtcgtatccaacaccgacatatataataacactgaattatgtgatttt 152  Q
    ||||||||||| | |||  | |||||||||||||| | ||||  ||||||| |||| ||| |||||||||  | |||| ||||||||||||| ||||||    
T  16073512 tatgaagcatggacactcctcggattaggcgtgtcttagtgtcggacatgtatcgtgtccgacaccgacacttgtaattacactgaattatgcgatttt 16073414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 152
Target Start/End: Original strand, 35157926 - 35158024
Alignment:
Q  54 tatgaagcatgaatactttttggattaggcgtgtcatggtgtttgacatgtgtcgtatccaacaccgacatatataataacactgaattatgtgatttt 152  Q
    ||||||||| | | |||| | |||||| ||||||   |||||| |||||||||||| ||  |||||||||  |||||| ||||| ||||||||||||||    
T  35157926 tatgaagcacggacacttctcggattaagcgtgttccggtgttggacatgtgtcgtgtcagacaccgacacttataattacactaaattatgtgatttt 35158024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 152
Target Start/End: Original strand, 36509033 - 36509131
Alignment:
Q  54 tatgaagcatgaatactttttggattaggcgtgtcatggtgtttgacatgtgtcgtatccaacaccgacatatataataacactgaattatgtgatttt 152  Q
    |||||||||||||||||| | ||||||  |||||| |||| |  |||| ||||||  ||| || |||||| ||||||| |||||  |||||||||||||    
T  36509033 tatgaagcatgaatacttctcggattaaacgtgtcctggtatcagacacgtgtcgcgtccgacgccgacacatataattacacttgattatgtgatttt 36509131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 152
Target Start/End: Original strand, 54580008 - 54580062
Alignment:
Q  98 gacatgtgtcgtatccaacaccgacatatataataacactgaattatgtgatttt 152  Q
    |||| ||||||| ||| |||||||||  |||||| ||||||||||||||||||||    
T  54580008 gacacgtgtcgtgtccgacaccgacacttataattacactgaattatgtgatttt 54580062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 174
Target Start/End: Original strand, 21539855 - 21539928
Alignment:
Q  101 atgtgtcgtatccaacaccgacatatataataacactgaattatgtgattttcttaaataattaacgatgtcgg 174  Q
    ||||||| ||||  |||| || ||||||||| ||||| |||||| |||||||||||||| ||||| | ||||||    
T  21539855 atgtgtcatatctgacacggatatatataattacactaaattatatgattttcttaaattattaatggtgtcgg 21539928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 152
Target Start/End: Original strand, 23292948 - 23293025
Alignment:
Q  75 ggattaggcgtgtcatggtgtttgacatgtgtcgtatccaacaccgacatatataataacactgaattatgtgatttt 152  Q
    ||||||||||||||  |||||  |||| ||||||| ||| |||||||||  | |||| | ||||||||||||||||||    
T  23292948 ggattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattatactgaattatgtgatttt 23293025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 159
Target Start/End: Complemental strand, 13134503 - 13134463
Alignment:
Q  119 cgacatatataataacactgaattatgtgattttcttaaat 159  Q
    ||||| ||||||| ||||| |||||||||||||||||||||    
T  13134503 cgacacatataattacactaaattatgtgattttcttaaat 13134463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 154
Target Start/End: Complemental strand, 40613504 - 40613468
Alignment:
Q  118 ccgacatatataataacactgaattatgtgattttct 154  Q
    |||||| ||||||| ||||||||||||||||||||||    
T  40613504 ccgacacatataattacactgaattatgtgattttct 40613468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 77 - 174
Target Start/End: Complemental strand, 9658974 - 9658877
Alignment:
Q  77 attaggcgtgtcatggtgtttgacatgtgtcgtatccaacaccgacatatataataacactgaattatgtgattttcttaaataattaacgatgtcgg 174  Q
    |||||||||||   |||||  |||| ||||||| || |||||||||| ||||||| ||||||||||||||||||||||||||| |||| || ||||||    
T  9658974 attaggcgtgttccggtgtcagacacgtgtcgtgtctaacaccgacaaatataattacactgaattatgtgattttcttaaattattagcggtgtcgg 9658877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 99 - 174
Target Start/End: Complemental strand, 19040425 - 19040350
Alignment:
Q  99 acatgtgtcgtatccaacaccgacatatataataacactgaattatgtgattttcttaaataattaacgatgtcgg 174  Q
    ||||||||||| ||| |||| |||| ||||||| |||||||||||||||||||||| |||| |||| || ||||||    
T  19040425 acatgtgtcgtgtccgacacagacacatataattacactgaattatgtgattttctcaaattattagcggtgtcgg 19040350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 98 - 164
Target Start/End: Original strand, 32511651 - 32511717
Alignment:
Q  98 gacatgtgtcgtatccaacaccgacatatataataacactgaattatgtgattttcttaaataatta 164  Q
    ||||| |||||||||| ||||| |||  |||||| ||||||||||||||||||||||||||| ||||    
T  32511651 gacatatgtcgtatccgacaccaacacttataattacactgaattatgtgattttcttaaattatta 32511717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 83 - 159
Target Start/End: Original strand, 13364675 - 13364751
Alignment:
Q  83 cgtgtcatggtgtttgacatgtgtcgtatccaacaccgacatatataataacactgaattatgtgattttcttaaat 159  Q
    |||||| ||||||  ||||||| |||| ||||||||||||| |||| || |||||||||||| ||||||||| ||||    
T  13364675 cgtgtcctggtgtcagacatgtatcgtgtccaacaccgacacatatgattacactgaattatatgattttctcaaat 13364751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 98 - 177
Target Start/End: Original strand, 31579212 - 31579289
Alignment:
Q  98 gacatgtgtcgtatccaacaccgacatatataataacactgaattatgtgattttcttaaataattaacgatgtcggtgt 177  Q
    |||||||||||| ||| ||||||||| |||  || |||||||||||||||||||||| |||| ||||||| ||| |||||    
T  31579212 gacatgtgtcgtgtccgacaccgacacata--attacactgaattatgtgattttctcaaattattaacggtgttggtgt 31579289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 98 - 164
Target Start/End: Original strand, 7265578 - 7265644
Alignment:
Q  98 gacatgtgtcgtatccaacaccgacatatataataacactgaattatgtgattttcttaaataatta 164  Q
    ||||||| | || ||| ||||||||| ||||||| |||||||||||||||||||||| |||| ||||    
T  7265578 gacatgtattgtgtccgacaccgacacatataattacactgaattatgtgattttctcaaattatta 7265644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 178
Target Start/End: Complemental strand, 5462737 - 5462680
Alignment:
Q  121 acatatataataacactgaattatgtgattttcttaaataattaacgatgtcggtgtc 178  Q
    ||||||||||| ||| |||||||||||||||||| |||| ||||||| |||| |||||    
T  5462737 acatatataattacaatgaattatgtgattttctcaaattattaacggtgtcagtgtc 5462680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 164
Target Start/End: Original strand, 9025496 - 9025545
Alignment:
Q  115 acaccgacatatataataacactgaattatgtgattttcttaaataatta 164  Q
    ||||||||| ||||||| |||||||||||||||||||||| |||| ||||    
T  9025496 acaccgacacatataattacactgaattatgtgattttctcaaattatta 9025545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 164
Target Start/End: Complemental strand, 19044521 - 19044472
Alignment:
Q  115 acaccgacatatataataacactgaattatgtgattttcttaaataatta 164  Q
    ||||||||| ||||||||||||||||||||||||| |||| |||| ||||    
T  19044521 acaccgacacatataataacactgaattatgtgatattctcaaattatta 19044472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 159
Target Start/End: Original strand, 14796192 - 14796236
Alignment:
Q  115 acaccgacatatataataacactgaattatgtgattttcttaaat 159  Q
    |||||||||||||||||  | ||||||||||||||||||||||||    
T  14796192 acaccgacatatataattgcgctgaattatgtgattttcttaaat 14796236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 174
Target Start/End: Original strand, 5732512 - 5732571
Alignment:
Q  115 acaccgacatatataataacactgaattatgtgattttcttaaataattaacgatgtcgg 174  Q
    ||||||||| ||||||| ||||| || ||||||||||||| |||| ||||||| ||||||    
T  5732512 acaccgacacatataattacactaaaatatgtgattttctcaaattattaacggtgtcgg 5732571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 159
Target Start/End: Complemental strand, 7378047 - 7377992
Alignment:
Q  104 tgtcgtatccaacaccgacatatataataacactgaattatgtgattttcttaaat 159  Q
    |||||| ||| ||||||||| ||||||| ||| |||||||||||||||||| ||||    
T  7378047 tgtcgtgtccgacaccgacacatataattacattgaattatgtgattttctcaaat 7377992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 152
Target Start/End: Complemental strand, 28152216 - 28152118
Alignment:
Q  54 tatgaagcatgaatactttttggattaggcgtgtcatggtgtttgacatgtgtcgtatccaacaccgacatatataataacactgaattatgtgatttt 152  Q
    ||||||||| ||| |||  | ||||||||| ||||  |||||  |||| ||||||| ||| |||||||||  | |||| ||||||||||||||||||||    
T  28152216 tatgaagcacgaacactcctcggattaggcctgtcccggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattacactgaattatgtgatttt 28152118  T

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Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 152
Target Start/End: Original strand, 33001230 - 33001328
Alignment:
Q  54 tatgaagcatgaatactttttggattaggcgtgtcatggtgtttgacatgtgtcgtatccaacaccgacatatataataacactgaattatgtgatttt 152  Q
    |||||||||  || ||| |||||||||||||| |   |||||  |||| ||||||| ||| ||||||||| ||||||| ||| | ||||||||||||||    
T  33001230 tatgaagcacaaacactctttggattaggcgtatttcggtgtcagacacgtgtcgtgtccgacaccgacacatataattacatttaattatgtgatttt 33001328  T

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Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 152
Target Start/End: Complemental strand, 7027299 - 7027262
Alignment:
Q  115 acaccgacatatataataacactgaattatgtgatttt 152  Q
    ||||||||| ||||||| ||||||||||||||||||||    
T  7027299 acaccgacacatataattacactgaattatgtgatttt 7027262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 164
Target Start/End: Complemental strand, 7086852 - 7086803
Alignment:
Q  115 acaccgacatatataataacactgaattatgtgattttcttaaataatta 164  Q
    ||||||||| ||||||| ||||| |||||||||||||||| |||| ||||    
T  7086852 acaccgacacatataattacactaaattatgtgattttctcaaattatta 7086803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 123
Target Start/End: Complemental strand, 9523020 - 9522951
Alignment:
Q  54 tatgaagcatgaatactttttggattaggcgtgtcatggtgtttgacatgtgtcgtatccaacaccgaca 123  Q
    ||||||||||| || || |||||||||||||||||  |||||  |||| |||||| |||| |||||||||    
T  9523020 tatgaagcatggatgctatttggattaggcgtgtctcggtgtcggacacgtgtcggatccgacaccgaca 9522951  T

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Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 164
Target Start/End: Complemental strand, 9617491 - 9617442
Alignment:
Q  115 acaccgacatatataataacactgaattatgtgattttcttaaataatta 164  Q
    ||||||||| ||||||| ||| |||||||||||||||||| |||| ||||    
T  9617491 acaccgacacatataattacattgaattatgtgattttctcaaattatta 9617442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 164
Target Start/End: Original strand, 11784218 - 11784267
Alignment:
Q  115 acaccgacatatataataacactgaattatgtgattttcttaaataatta 164  Q
    ||||||||||||||||| ||||||| | |||||||||||| |||| ||||    
T  11784218 acaccgacatatataattacactgattcatgtgattttctcaaattatta 11784267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 152
Target Start/End: Original strand, 12627539 - 12627616
Alignment:
Q  75 ggattaggcgtgtcatggtgtttgacatgtgtcgtatccaacaccgacatatataataacactgaattatgtgatttt 152  Q
    |||||||| |||||  |||||  ||||||||| || ||| ||| ||||| |||| || ||||||||||||||||||||    
T  12627539 ggattaggagtgtctcggtgtcggacatgtgtggtgtccgacatcgacacatattattacactgaattatgtgatttt 12627616  T

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Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 152
Target Start/End: Original strand, 26314612 - 26314673
Alignment:
Q  91 ggtgtttgacatgtgtcgtatccaacaccgacatatataataacactgaattatgtgatttt 152  Q
    |||||| |||| ||||||||||  || |||||||||||||| ||| |||||||| |||||||    
T  26314612 ggtgttggacaagtgtcgtatctgaccccgacatatataattacattgaattatatgatttt 26314673  T

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Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 152
Target Start/End: Complemental strand, 34595231 - 34595154
Alignment:
Q  75 ggattaggcgtgtcatggtgtttgacatgtgtcgtatccaacaccgacatatataataacactgaattatgtgatttt 152  Q
    |||||||| |||||  |||||  |||| ||||||| ||| |||||||||  | |||| ||||||||||||||||||||    
T  34595231 ggattaggtgtgtcccggtgtcagacacgtgtcgtgtccgacaccgacacttgtaattacactgaattatgtgatttt 34595154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 159
Target Start/End: Complemental strand, 9629440 - 9629396
Alignment:
Q  115 acaccgacatatataataacactgaattatgtgattttcttaaat 159  Q
    ||||||||| ||||||| ||| |||||||||||||||||| ||||    
T  9629440 acaccgacacatataattacattgaattatgtgattttctcaaat 9629396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 159
Target Start/End: Original strand, 11591876 - 11591916
Alignment:
Q  119 cgacatatataataacactgaattatgtgattttcttaaat 159  Q
    ||||| ||||||| |||||||||||||||||||||| ||||    
T  11591876 cgacacatataattacactgaattatgtgattttctcaaat 11591916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 159
Target Start/End: Original strand, 13360374 - 13360418
Alignment:
Q  115 acaccgacatatataataacactgaattatgtgattttcttaaat 159  Q
    ||||||| | ||||||| |||||||||||||||||||||| ||||    
T  13360374 acaccgaaacatataattacactgaattatgtgattttctcaaat 13360418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 174
Target Start/End: Original strand, 17341677 - 17341725
Alignment:
Q  126 tataataacactgaattatgtgattttcttaaataattaacgatgtcgg 174  Q
    |||||| |||||||||||||||||||| | |||| ||||||| ||||||    
T  17341677 tataattacactgaattatgtgattttatcaaattattaacggtgtcgg 17341725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 159
Target Start/End: Complemental strand, 26562742 - 26562702
Alignment:
Q  119 cgacatatataataacactgaattatgtgattttcttaaat 159  Q
    ||||| ||||||| |||||||||||||||||||||| ||||    
T  26562742 cgacacatataattacactgaattatgtgattttctcaaat 26562702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 171
Target Start/End: Original strand, 34073349 - 34073405
Alignment:
Q  115 acaccgacatatataataacactgaattatgtgattttcttaaataattaacgatgt 171  Q
    ||||||||  ||||||| ||||||||||||| |||||||| |||| |||| ||||||    
T  34073349 acaccgacccatataattacactgaattatgagattttctcaaattattagcgatgt 34073405  T

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Target: scaffold0110 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 113 - 174
Target Start/End: Complemental strand, 28909 - 28848
Alignment:
Q  113 caacaccgacatatataataacactgaattatgtgattttcttaaataattaacgatgtcgg 174  Q
    ||||||||||| ||||||| ||| ||||||||| ||||||||||||| ||||||| ||||||    
T  28909 caacaccgacacatataattacattgaattatgcgattttcttaaattattaacggtgtcgg 28848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 73 - 165
Target Start/End: Complemental strand, 90942 - 90850
Alignment:
Q  73 ttggattaggcgtgtcatggtgtttgacatgtgtcgtatccaacaccgacatatataataacactgaattatgtgattttcttaaataattaa 165  Q
    |||||||||||||||  ||||||  |||| |||| || ||  ||| ||||||||||||| |||||||||||| ||||||||| |||| |||||    
T  90942 ttggattaggcgtgttttggtgtcggacacgtgttgtgtctgacatcgacatatataattacactgaattatatgattttctcaaattattaa 90850  T

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Target: scaffold0050 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 166
Target Start/End: Complemental strand, 70375 - 70284
Alignment:
Q  75 ggattaggcgtgtcatggtgtttgacatgtgtcgtatccaacaccgacatatataataacactgaattatgtgattttcttaaataattaac 166  Q
    ||||||||| |||| ||||||  |||| ||||||| ||| |||||||||  |||||| |||||||||||||| ||||| | |||| ||||||    
T  70375 ggattaggcatgtcctggtgtcggacacgtgtcgtgtccgacaccgacacttataattacactgaattatgttattttttcaaattattaac 70284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 159
Target Start/End: Original strand, 44529 - 44571
Alignment:
Q  117 accgacatatataataacactgaattatgtgattttcttaaat 159  Q
    ||||||| ||||||| |||||||||||||||||||||| ||||    
T  44529 accgacacatataattacactgaattatgtgattttctcaaat 44571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 177
Target Start/End: Original strand, 135314 - 135376
Alignment:
Q  115 acaccgacatatataataacactgaattatgtgattttcttaaataattaacgatgtcggtgt 177  Q
    ||||||||| ||||||| |||| ||||||||||||||||| |||| |||| |  |||||||||    
T  135314 acaccgacacatataattacacagaattatgtgattttctcaaattattagcagtgtcggtgt 135376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 164
Target Start/End: Original strand, 9749 - 9798
Alignment:
Q  115 acaccgacatatataataacactgaattatgtgattttcttaaataatta 164  Q
    ||||||||| ||||||| ||||||||||| |||||||||| |||| ||||    
T  9749 acaccgacacatataattacactgaattaagtgattttctcaaattatta 9798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0697 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0697
Description:

Target: scaffold0697; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 174
Target Start/End: Complemental strand, 1718 - 1642
Alignment:
Q  98 gacatgtgtcgtatccaacaccgacatatataataacactgaattatgtgattttcttaaataattaacgatgtcgg 174  Q
    |||||||||||| ||| |||||||||  |||||| | ||  |||||| ||||||||| |||| ||||||| ||||||    
T  1718 gacatgtgtcgtgtccgacaccgacacttataattataccaaattatatgattttctcaaattattaacggtgtcgg 1642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 159
Target Start/End: Original strand, 84975 - 85019
Alignment:
Q  115 acaccgacatatataataacactgaattatgtgattttcttaaat 159  Q
    ||||||||||||||||| ||||  |||||| ||||||||||||||    
T  84975 acaccgacatatataattacacataattatatgattttcttaaat 85019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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