View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9845_low_43 (Length: 202)
Name: NF9845_low_43
Description: NF9845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9845_low_43 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 178; Significance: 3e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 25 - 202
Target Start/End: Original strand, 54472082 - 54472259
Alignment:
| Q |
25 |
gacgtcacatcatcatcataaatcatcaccctcgaacaacggcaacaatacaaatgataacaatgggaatcaattgagcgtgggtggtataatagcagtt |
124 |
Q |
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| T |
54472082 |
gacgtcacatcatcatcataaatcatcaccctcgaacaacggcaacaatacaaatgataacaatgggaatcaattgagcgtgggtggtataatagcagtt |
54472181 |
T |
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| Q |
125 |
gcaggtgcagcttgtataatcctccttgtcattatcctactctgcgttatatgtacaagaaggaagaagagatcacaa |
202 |
Q |
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| T |
54472182 |
gcaggtgcagcttgtataatcctccttgtcattatcctactctgcgttatatgtacaagaaggaagaagagatcacaa |
54472259 |
T |
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