View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9845_low_6 (Length: 454)
Name: NF9845_low_6
Description: NF9845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9845_low_6 |
 | |
|
| [»] scaffold0076 (1 HSPs) |
| | |
|
| [»] scaffold0208 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0076 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: scaffold0076
Description:
Target: scaffold0076; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 59 - 449
Target Start/End: Complemental strand, 48005 - 47615
Alignment:
| Q |
59 |
atttcactgataaccgggttgatgtaggtgagaaattgagttcgtttgttgaatcttgaggccctgaaaattacttaggaagtacaatacccttgctgta |
158 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
48005 |
atttcattgataaccgggttgatgtaggtgagaaattgagttcgtttgttgaatcttgaggccctgaaaattacttaggaagtacaatactcttgctgta |
47906 |
T |
|
| Q |
159 |
gtagtagtaatagaatcaaggatgaaagtccaatctattgtctccataatattaattatcactctatcacagtgcatatatcgcataaacgacgaacaaa |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47905 |
gtagtagtaatagaatcaaggatgaaagtccaatctattgtctccagaatattaattatcactctatcacagtgcatatatcgcataaacgacgaacaaa |
47806 |
T |
|
| Q |
259 |
aagtattgtaatagcagaaaaccaaagtccgattcggtttaacaaaaggatcaacggagaataacattgttagaaaggtaccacctgacacgatatcatg |
358 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
47805 |
aagtattgtaatagcagaaaaccaaagtccgattcggtttaacaaaaggatcaacggagaataacagagttagaaaggtaccacctgacacgatatcatg |
47706 |
T |
|
| Q |
359 |
acttctgcgatgtttaggtggtcatacgtctaggccgcctatattcctcggcggcggtgttggcgaagtttggaatattgcctttgcttct |
449 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
47705 |
acttctgtgatgtttaggtggtcatacgtctaggccgcctatattcctcggcggcggtgttggcgaagttcggaatattgccttagcttct |
47615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 351; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 18 - 449
Target Start/End: Original strand, 20133824 - 20134251
Alignment:
| Q |
18 |
caaaggcaactaaattcataaagtgaaatcgaaagccatacatttcactgataaccgggttgatgtaggtgagaaattgagttcgtttgttgaatcttga |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
20133824 |
caaaggcaactaaattcataaagtgaaatcgaaagccatacatttcactgataaccgggttgatgtaggtgagaaattgagtttgtttgttgaatcttga |
20133923 |
T |
|
| Q |
118 |
ggccctgaaaattacttaggaagtacaatacccttgctgtagtagtagta---atagaatcaaggatgaaagtccaatctattgtctccataatattaat |
214 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| | | ||||||||| |
|
|
| T |
20133924 |
ggtcctgaaaattacttaggaagtacaataccctggctgtagtagtagtagtaatagaatcaaggatgaaagtccaatctctag-------aatattaat |
20134016 |
T |
|
| Q |
215 |
tatcactctatcacagtgcatatatcgcataaacgacgaacaaaaagtattgtaatagcagaaaaccaaagtccgattcggtttaacaaaaggatcaacg |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |
|
|
| T |
20134017 |
tatcactctatcacagtgcatatatcgcataaacgacgaacaaaaagtattgtaatagcagaaaaccaaagtccaattcggtttaacaaaaggatccacg |
20134116 |
T |
|
| Q |
315 |
gagaataacattgttagaaaggtaccacctgacacgatatcatgacttctgcgatgtttaggtggtcatacgtctaggccgcctatattcctcggcggcg |
414 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20134117 |
gagaataacagagttagaaaggtaccacctgacacgatatcatgacttctgcgatgtttaggtggtcatacgtctaggccgcctatattcctcggcggcg |
20134216 |
T |
|
| Q |
415 |
gtgttggcgaagtttggaatattgcctttgcttct |
449 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||| |
|
|
| T |
20134217 |
gtgttggcgaagttcggaatattgccttggcttct |
20134251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 59 - 219
Target Start/End: Complemental strand, 14674726 - 14674569
Alignment:
| Q |
59 |
atttcactgataaccgggttgatgtaggtgagaaattgagttcgtttgttgaatcttgaggccctgaaaattacttaggaagtacaatacccttgctgta |
158 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
14674726 |
atttcacttataaccgggttgatgtaggtgagaaattgagtttgtttgttgaatcttgaggccctgaaaattacttaggaagtacaacaaccttgctgta |
14674627 |
T |
|
| Q |
159 |
gtagtagtaatagaatcaaggatgaaagtccaatctattgtctccataatattaattatca |
219 |
Q |
| |
|
||| || | | ||||| ||||||| |||||| |||||||||||| ||||| |||||||| |
|
|
| T |
14674626 |
gtattaatga---aatcagggatgaatgtccaacctattgtctccaaaatatcaattatca |
14674569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 67 - 219
Target Start/End: Complemental strand, 31710348 - 31710199
Alignment:
| Q |
67 |
gataaccgggttgatgtaggtgagaaattgagttcgtttgttgaatcttgaggccctgaaaattacttaggaagtacaatacccttgctgtagtagtagt |
166 |
Q |
| |
|
|||||||| | ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || | |
|
|
| T |
31710348 |
gataaccgagctgatggagatgagaaattgagttcgtttgttgaatcttgaggccctgaaaattacttaggaagtacaacacccttgctgtagtattaat |
31710249 |
T |
|
| Q |
167 |
aatagaatcaaggatgaaagtccaatctattgtctccataatattaattatca |
219 |
Q |
| |
|
| ||||| ||||||| |||||| |||||||||||| ||||| |||||||| |
|
|
| T |
31710248 |
ga---aatcagggatgaaggtccaacctattgtctccaaaatatcaattatca |
31710199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 140 - 219
Target Start/End: Complemental strand, 18974485 - 18974406
Alignment:
| Q |
140 |
gtacaatacccttgctgtagtagtagtaatagaatcaaggatgaaagtccaatctattgtctccataatattaattatca |
219 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||| |
|
|
| T |
18974485 |
gtacaatacccgtgctgtagtagtagtaatagaatcaaggatgaaagtccaacctattgtctccaaaatatccattatca |
18974406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 53
Target Start/End: Original strand, 1830 - 1865
Alignment:
| Q |
18 |
caaaggcaactaaattcataaagtgaaatcgaaagc |
53 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
1830 |
caaaggcaactaaattcataaagtgaaatcgaaagc |
1865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 351; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 18 - 449
Target Start/End: Complemental strand, 44358247 - 44357820
Alignment:
| Q |
18 |
caaaggcaactaaattcataaagtgaaatcgaaagccatacatttcactgataaccgggttgatgtaggtgagaaattgagttcgtttgttgaatcttga |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
44358247 |
caaaggcaactaaattcataaagtgaaatcgaaagccatacatttcactgataaccgggttgatgtaggtgagaaattgagtttgtttgttgaatcttga |
44358148 |
T |
|
| Q |
118 |
ggccctgaaaattacttaggaagtacaatacccttgctgtagtagtagta---atagaatcaaggatgaaagtccaatctattgtctccataatattaat |
214 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| | | ||||||||| |
|
|
| T |
44358147 |
ggtcctgaaaattacttaggaagtacaataccctggctgtagtagtagtagtaatagaatcaaggatgaaagtccaatctctag-------aatattaat |
44358055 |
T |
|
| Q |
215 |
tatcactctatcacagtgcatatatcgcataaacgacgaacaaaaagtattgtaatagcagaaaaccaaagtccgattcggtttaacaaaaggatcaacg |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |
|
|
| T |
44358054 |
tatcactctatcacagtgcatatatcgcataaacgacgaacaaaaagtattgtaatagcagaaaaccaaagtccaattcggtttaacaaaaggatccacg |
44357955 |
T |
|
| Q |
315 |
gagaataacattgttagaaaggtaccacctgacacgatatcatgacttctgcgatgtttaggtggtcatacgtctaggccgcctatattcctcggcggcg |
414 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44357954 |
gagaataacagagttagaaaggtaccacctgacacgatatcatgacttctgcgatgtttaggtggtcatacgtctaggccgcctatattcctcggcggcg |
44357855 |
T |
|
| Q |
415 |
gtgttggcgaagtttggaatattgcctttgcttct |
449 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||| |
|
|
| T |
44357854 |
gtgttggcgaagttcggaatattgccttggcttct |
44357820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 140 - 210
Target Start/End: Original strand, 5331387 - 5331457
Alignment:
| Q |
140 |
gtacaatacccttgctgtagtagtagtaatagaatcaaggatgaaagtccaatctattgtctccataatat |
210 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
5331387 |
gtacaatacccgtgctgtagtagtagtaatagaatcaaggatgaaagtccaacctattgtctccaaaatat |
5331457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 168; Significance: 7e-90; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 65 - 240
Target Start/End: Complemental strand, 12325893 - 12325718
Alignment:
| Q |
65 |
ctgataaccgggttgatgtaggtgagaaattgagttcgtttgttgaatcttgaggccctgaaaattacttaggaagtacaatacccttgctgtagtagta |
164 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12325893 |
ctgataaccgggttgatgtaggtgagaaattgagttcgtttgttgaatcttgaggccctgaaaattacttaggaagtacaatacccttgctgtagtagta |
12325794 |
T |
|
| Q |
165 |
gtaatagaatcaaggatgaaagtccaatctattgtctccataatattaattatcactctatcacagtgcatatatc |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
12325793 |
gtaatagaatcaaggatgaaagtccaatctattgtctccagaatattaattatcaccctatcacagtgcatatatc |
12325718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 236 - 442
Target Start/End: Complemental strand, 12325643 - 12325444
Alignment:
| Q |
236 |
atatcgcataaacgacgaacaaaaagtattgtaatagcagaaaaccaaagtccgattcggtttaacaaaaggatcaacggagaataacattgttagaaag |
335 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |||||| || | |||| ||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
12325643 |
atatcgcacaaacgacgaacaaaaagtattgtaat----gaaaactaatggccgactcggtttaacaaaaggatcaacggagaataacagagttagaaag |
12325548 |
T |
|
| Q |
336 |
gtaccacctgacacgatatcatgacttctgcgatgtttaggtggtcatacgtctaggccgcctatattcctcggcggcggtgttggcgaagtttggaata |
435 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||| |||||| |
|
|
| T |
12325547 |
gtaccacctgacacgatatcatgacttctgcgatgtttaggtggtcatacgtctaggctgcctatcttcctcg---gcggtgttggcgaagttcggaata |
12325451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 116; Significance: 8e-59; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 48 - 220
Target Start/End: Complemental strand, 11203611 - 11203439
Alignment:
| Q |
48 |
gaaagccatacatttcactgat---aaccgggttgatgtaggtgagaaattgagttcgtttgttgaatcttgaggccctgaaaattacttaggaagtaca |
144 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11203611 |
gaaagccatacatttcactgatgataaccgggttgatgtaggggagaagttgagttcatttgttgaatcttgaggccctgaaaattacttaggaagtaca |
11203512 |
T |
|
| Q |
145 |
atacccttgctgtagtagtagtaatagaatcaaggatgaaagtccaatctattgtctccataatattaattatcac |
220 |
Q |
| |
|
||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
11203511 |
atacctttgctgtagt---agtaatgaaatcaaggatgaaagtccaatctattgtctccagaatagtaattatcac |
11203439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 83; Significance: 4e-39; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 67 - 219
Target Start/End: Original strand, 4281540 - 4281689
Alignment:
| Q |
67 |
gataaccgggttgatgtaggtgagaaattgagttcgtttgttgaatcttgaggccctgaaaattacttaggaagtacaatacccttgctgtagtagtagt |
166 |
Q |
| |
|
|||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| || | |
|
|
| T |
4281540 |
gataaccgggctgatggagatgagaaattgagttcgtttgttgaatcttgaggccctgaaaattacgtaggaagtacaacacccttgctgtagtattaat |
4281639 |
T |
|
| Q |
167 |
aatagaatcaaggatgaaagtccaatctattgtctccataatattaattatca |
219 |
Q |
| |
|
| ||||| ||||||| |||||| |||||||||||| ||||| ||||||| |
|
|
| T |
4281640 |
ga---aatcagggatgaaggtccaacctattgtctccaaaatatccattatca |
4281689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 67 - 156
Target Start/End: Complemental strand, 17594851 - 17594762
Alignment:
| Q |
67 |
gataaccgggttgatgtaggtgagaaattgagttcgtttgttgaatcttgaggccctgaaaattacttaggaagtacaatacccttgctg |
156 |
Q |
| |
|
||||||| || ||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||| |
|
|
| T |
17594851 |
gataaccaggctgatggagatgagaaattgagttcgtttgttgaatcttgaggacctgaaaattacttaggaagtataacacccttgctg |
17594762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 140 - 219
Target Start/End: Original strand, 19807200 - 19807279
Alignment:
| Q |
140 |
gtacaatacccttgctgtagtagtagtaatagaatcaaggatgaaagtccaatctattgtctccataatattaattatca |
219 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||| |
|
|
| T |
19807200 |
gtacaatacccgtgctgtagtagtagtaatagaatcaaggatgaaagtccaacctattgtctccaaaatatccattatca |
19807279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 67 - 219
Target Start/End: Complemental strand, 8165979 - 8165833
Alignment:
| Q |
67 |
gataaccgggttgatgtaggtgagaaattgagttcgtttgttgaatcttgaggccctgaaaattacttaggaagtacaatacccttgctgtagtagtagt |
166 |
Q |
| |
|
||||||||||||| || | ||||||||||||||| || |||||||||||||||||||||||||||||||||| ||||| ||||| || ||| | |
|
|
| T |
8165979 |
gataaccgggttgttggaaatgagaaattgagttcattcgttgaatcttgaggccctgaaaattacttaggaaatacaacgccctt------gtggtatt |
8165886 |
T |
|
| Q |
167 |
aatagaatcaaggatgaaagtccaatctattgtctccataatattaattatca |
219 |
Q |
| |
|
||| ||||||| ||||| |||||| |||||||||||| ||||| |||||||| |
|
|
| T |
8165885 |
aatgaaatcaagaatgaaggtccaacctattgtctccaaaatatcaattatca |
8165833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0208 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0208
Description:
Target: scaffold0208; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 119
Target Start/End: Original strand, 329 - 383
Alignment:
| Q |
65 |
ctgataaccgggttgatgtaggtgagaaattgagttcgtttgttgaatcttgagg |
119 |
Q |
| |
|
||||||||| || |||| || |||||||||||||| |||||||||||||||||| |
|
|
| T |
329 |
ctgataaccaggacgatggagatgagaaattgagtttgtttgttgaatcttgagg |
383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University