View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9845_low_7 (Length: 452)
Name: NF9845_low_7
Description: NF9845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9845_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 1e-94; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 22181903 - 22181720
Alignment:
| Q |
1 |
ttaaatgtcggagaaaacgaggttacgatgcatttttt-ggtctgttattggatttagatttatattgaaatttagttttatggaggaagagttaattgt |
99 |
Q |
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| T |
22181903 |
ttaaatgtcggagaaaacgaggttacgatgcatttttttggtctgttattggatttagatttatattgaaatttagttttatggaggaagagttaattgt |
22181804 |
T |
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| Q |
100 |
ggtaattttggaaataaaattaagtcgttaatgtttcttcttgattagcatgttcagttatgaaattgattacttgtgtttgat |
183 |
Q |
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| T |
22181803 |
ggtaattttggaaataaaattaagtcgttaatgtttcttcttgattagcatgttcagttatgaaattgattacttgtgtttgat |
22181720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 248 - 440
Target Start/End: Complemental strand, 22181655 - 22181466
Alignment:
| Q |
248 |
tactatttcattcgaattgaatggagggtagttgttaaaggatttggagatggcttaggtggtagtagcagtagagatttataagttgttgtatttcatc |
347 |
Q |
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| T |
22181655 |
tactatttcattcgaattgaatggagggtagttgttaaaggatttggagatggcttaggt---agtagcagtagagatttataagttgttgtatttcatc |
22181559 |
T |
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| Q |
348 |
aatatcgagaataggtacttgaaatggaaagctccaacactcagcctgacatttaagctgtaaattaggccagccaactactctctccgtctc |
440 |
Q |
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| T |
22181558 |
aatatcgagaataggtacttgaaatggaaagctccaacactcagcctgacatttaagccgtaaattaggccagccaactactctctccgtctc |
22181466 |
T |
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