View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9845_low_8 (Length: 450)

Name: NF9845_low_8
Description: NF9845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9845_low_8
NF9845_low_8
[»] chr1 (2 HSPs)
chr1 (14-424)||(9028117-9028540)
chr1 (200-368)||(48510065-48510233)
[»] chr2 (1 HSPs)
chr2 (66-378)||(2211954-2212266)
[»] chr7 (3 HSPs)
chr7 (192-375)||(3374807-3374990)
chr7 (200-376)||(42739552-42739728)
chr7 (200-376)||(48458805-48458981)
[»] chr8 (3 HSPs)
chr8 (102-301)||(30086272-30086471)
chr8 (145-283)||(26124816-26124952)
chr8 (67-301)||(40742909-40743141)
[»] chr6 (2 HSPs)
chr6 (160-298)||(33899797-33899934)
chr6 (185-230)||(1313052-1313097)
[»] chr3 (2 HSPs)
chr3 (145-298)||(35929950-35930102)
chr3 (160-320)||(14958432-14958595)
[»] chr5 (1 HSPs)
chr5 (200-324)||(9276332-9276456)
[»] chr4 (1 HSPs)
chr4 (200-376)||(49518879-49519055)


Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 14 - 424
Target Start/End: Original strand, 9028117 - 9028540
Alignment:
Q  14 cataatcattgagagtaaacattataatgggtagaaaaatgagttgaattgaagaaaa-------------atgaggagaaagtgttcttgagaataaac 100  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||             ||||||||||||||| |||||||||||||    
T  9028117 cataatcattgagagtaaacattatcatgggtagaaaaatgagttgagttgaagaaaaatgagcttcaaaaatgaggagaaagtgtgcttgagaataaac 9028216  T
Q  101 attgaagcccgatgaaaagaaaaaattggagctttgaattcaagcatgggtaattatgaaaaatatatcttttaacaaaaagcaaattccagaattgctt 200  Q
    ||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  9028217 attgaagcctgatgaaaagaaaaaattggtgctttgaattgaagcatgggtaattatgaaaaatatattttttaacaaaatgcaaattccagaattgctt 9028316  T
Q  201 ttgagttgccgcagaagctacaatttgtggcttcctgttaactcacgttttggatgcaaacttgcttttttaaaattgcttttgactgtgtccaaacatc 300  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9028317 ttgagtttccgcaaaagctacaatttgtggcttcctgttaactcacgttttggatgcaaacttgcttttttaaaattgcttttgactgtgtccaaacatc 9028416  T
Q  301 atagaaaacggcaaactcacgtttagaagtaaaaacgcaggtttggggagctcaaacgctcaaccaaacatacacttaactgactaacacaaaaaactgg 400  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||  |||||||||||||||||||    
T  9028417 atagaaaacggcaaactcgcgtttagaagtaaaaacacaggtttggggagctcaaacgctcaaccaaacagacacttaatcgactaacacaaaaaactgg 9028516  T
Q  401 cttaccaatttcatatatacaagg 424  Q
    |||||| |||||||||||||||||    
T  9028517 cttaccgatttcatatatacaagg 9028540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 200 - 368
Target Start/End: Complemental strand, 48510233 - 48510065
Alignment:
Q  200 tttgagttgccgcagaagctacaatttgtggcttcctgttaactcacgttttggatgcaaacttgcttttttaaaattgcttttgactgtgtccaaacat 299  Q
    |||||||||||||||||||||   ||| ||||||| | | ||| |||||||||| | ||||| ||| |||| | | |||||||| | ||| |||||| ||    
T  48510233 tttgagttgccgcagaagctatgttttctggcttcttctaaacccacgttttgggttcaaacctgcgttttcagatttgcttttaattgtatccaaatat 48510134  T
Q  300 catagaaaacggcaaactcacgtttagaagtaaaaacgcaggtttggggagctcaaacgctcaaccaaa 368  Q
    || | |||  |  ||| |||||||| || ||  ||||| |||||||| ||||  |||| ||||||||||    
T  48510133 cacaaaaagtgataaagtcacgtttggaggtggaaacgtaggtttggtgagcaaaaacactcaaccaaa 48510065  T

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Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 66 - 378
Target Start/End: Complemental strand, 2212266 - 2211954
Alignment:
Q  66 agaaaaatgaggagaaagtgttcttgagaataaacattgaagcccgatgaaaagaaaaaattggagctttgaattcaagcatgggtaattatgaaaaata 165  Q
    |||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  2212266 agaaaaataaggagaaaatgttcttgagaataaacattgaagcctgatgaaaagaaaaaattggagctttgaattgaagcatgggtaattatgaaaaata 2212167  T
Q  166 tatcttttaacaaaaagcaaattccagaattgcttttgagttgccgcagaagctacaatttgtggcttcctgttaactcacgttttggatgcaaacttgc 265  Q
    ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2212166 tattttttaacaaaaagcaaattccataattgcttttgagttgccgcagaagctacaatttgtggcttcctgttaactcacgttttggatgcaaacttgc 2212067  T
Q  266 ttttttaaaattgcttttgactgtgtccaaacatcatagaaaacggcaaactcacgtttagaagtaaaaacgcaggtttggggagctcaaacgctcaacc 365  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||| |||||||    
T  2212066 ttttttataattgcttttgactgtgtccaaacatcatagaaaacgacaaactcacgtttggaagtaaaagcgcaggtttggggagctcaaacactcaacc 2211967  T
Q  366 aaacatacactta 378  Q
    ||| | |||||||    
T  2211966 aaatagacactta 2211954  T

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Target: chr7 (Bit Score: 140; Significance: 4e-73; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 192 - 375
Target Start/End: Complemental strand, 3374990 - 3374807
Alignment:
Q  192 gaattgcttttgagttgccgcagaagctacaatttgtggcttcctgttaactcacgttttggatgcaaacttgcttttttaaaattgcttttgactgtgt 291  Q
    |||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  3374990 gaattgcttttgagttgccgtagaagttacaatttgtagcttcctgttaactcacgttttggatgcaaacttgctttttcagaattgcttttgactgtgt 3374891  T
Q  292 ccaaacatcatagaaaacggcaaactcacgtttagaagtaaaaacgcaggtttggggagctcaaacgctcaaccaaacatacac 375  Q
    |||||||||||||||||| |||||||| ||||||||||||||| | || |||||| ||||||||||||||||||||||||||||    
T  3374890 ccaaacatcatagaaaactgcaaactcgcgtttagaagtaaaagctcacgtttggagagctcaaacgctcaaccaaacatacac 3374807  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 200 - 376
Target Start/End: Complemental strand, 42739728 - 42739552
Alignment:
Q  200 tttgagttgccgcagaagctacaatttgtggcttcctgttaactcacgttttggatgcaaacttgcttttttaaaattgcttttgactgtgtccaaacat 299  Q
    |||||||||||||||||||||   ||| ||||||| | | ||| |||||||||| | ||||| ||| |||| ||| |||||||| | ||| |||||||||    
T  42739728 tttgagttgccgcagaagctatgttttctggcttcttctaaacccacgttttgggttcaaacctgcgttttcaaatttgcttttaattgtatccaaacat 42739629  T
Q  300 catagaaaacggcaaactcacgtttagaagtaaaaacgcaggtttggggagctcaaacgctcaaccaaacatacact 376  Q
    || | |||  |  ||| ||||||||| ||||  |||||  ||||||| ||||  ||||| ||||||||||| |||||    
T  42739628 cacaaaaagggataaagtcacgtttaaaagtggaaacgtgggtttggtgagcaaaaacgttcaaccaaacagacact 42739552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 200 - 376
Target Start/End: Complemental strand, 48458981 - 48458805
Alignment:
Q  200 tttgagttgccgcagaagctacaatttgtggcttcctgttaactcacgttttggatgcaaacttgcttttttaaaattgcttttgactgtgtccaaacat 299  Q
    |||||||||||||| ||||||   ||| ||||||| | | ||| |||||||||| | ||||| ||| |||| | | ||||| || | ||| |||||||||    
T  48458981 tttgagttgccgcataagctatgttttctggcttcttctaaacccacgttttgggttcaaacctgcgttttcagatttgctattaattgtatccaaacat 48458882  T
Q  300 catagaaaacggcaaactcacgtttagaagtaaaaacgcaggtttggggagctcaaacgctcaaccaaacatacact 376  Q
    || | |||  |  ||| ||||||||  ||||| |||||  ||||||| ||||  ||||||||||||||||| |||||    
T  48458881 cacaaaaagtgataaagtcacgtttgaaagtagaaacgtgggtttggtgagcaaaaacgctcaaccaaacagacact 48458805  T

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Target: chr8 (Bit Score: 74; Significance: 9e-34; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 102 - 301
Target Start/End: Original strand, 30086272 - 30086471
Alignment:
Q  102 ttgaagcccgatgaaaag-aaaaaattggagctttgaattcaagcatgggtaattatgaaaaatatatcttttaacaaaaag-caaattccagaattgct 199  Q
    ||||||||||| |||||| |||||| ||||| ||||| || || |||||||| ||||||||||||||| | ||||||||||  |||| |||| |||||||    
T  30086272 ttgaagcccgaggaaaaggaaaaaaatggag-tttgagttgaatcatgggtatttatgaaaaatatatttcttaacaaaaaaacaaactccaaaattgct 30086370  T
Q  200 tttgagttgccgcagaagctacaatttgtggcttcctgttaactcacgttttggatgcaaacttgcttttttaaaattgcttttgactgtgtccaaacat 299  Q
    ||| |||||| ||||||||||||||||| |||||| ||||||| |||||||||   | ||| || |||||| |||||||||||||| ||| |||||||||    
T  30086371 ttt-agttgcagcagaagctacaatttgcggcttcatgttaacccacgttttgaccgtaaaattactttttcaaaattgcttttgattgtatccaaacat 30086469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 145 - 283
Target Start/End: Complemental strand, 26124952 - 26124816
Alignment:
Q  145 catgggtaattatgaaaaatatatcttttaacaaaaagcaaattccagaattgcttttgagttgccgcagaagctacaatttgtggcttcctgttaactc 244  Q
    |||||||| ||||| ||||||||| | ||||||||||||||| || |||||||||||| ||||||  || |||||| ||||| |||||||| |||||| |    
T  26124952 catgggtatttatggaaaatatatttcttaacaaaaagcaaactctagaattgctttt-agttgctaca-aagctataatttatggcttccagttaaccc 26124855  T
Q  245 acgttttggatgcaaacttgcttttttaaaattgctttt 283  Q
    |||||||| ||| ||| || |||||||||||||||||||    
T  26124854 acgttttgaatgtaaaattacttttttaaaattgctttt 26124816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 67 - 301
Target Start/End: Original strand, 40742909 - 40743141
Alignment:
Q  67 gaaaaatgaggagaaagtgttcttgagaataaacattgaagcccgatgaaaagaaaaaat--tggagctttgaattcaagcatgggtaattatgaaaaat 164  Q
    ||||||| | ||||||||||||   | |||||||||||||||| || ||||||||||||   | ||| ||||| || || |||||||| |||||||||||    
T  40742909 gaaaaataaagagaaagtgttccatataataaacattgaagcctgaggaaaagaaaaaaaaatagag-tttgagttgaatcatgggtatttatgaaaaat 40743007  T
Q  165 atatcttttaacaaaaag-caaattccagaattgcttttgagttgccgcagaagctacaatttgtggcttcctgttaactcacgttttggatgcaaactt 263  Q
    |||| | ||||||||||  |||| |||| |||| ||||| | |    ||||||||||||||||| ||||||  || ||| |||||||||  || ||| ||    
T  40743008 atatttcttaacaaaaaaacaaactccaaaattacttttaatt----gcagaagctacaatttgcggcttcaagtaaacccacgttttgactgtaaaatt 40743103  T
Q  264 gcttttttaaaattgcttttgactgtgtccaaacatca 301  Q
    | |||||  ||||||||||||| ||| |||||||||||    
T  40743104 gttttttcgaaattgcttttgattgtatccaaacatca 40743141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 5e-32; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 160 - 298
Target Start/End: Original strand, 33899797 - 33899934
Alignment:
Q  160 aaaatatatcttttaacaaaaagcaaattccagaattgcttttgagttgccgcagaagctacaatttgtggcttcctgttaactcacgttttggatgcaa 259  Q
    ||||||||| | ||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||| |||  |    
T  33899797 aaaatatatttcttaacaaaaagcaaactccaaaattgctttt-agttgccgcagaagctacaatttgtggcttccagttaacccacgttttgaatgtga 33899895  T
Q  260 acttgcttttttaaaattgcttttgactgtgtccaaaca 298  Q
    | ||||||||| | |||||||||||| | | ||||||||    
T  33899896 aattgctttttcagaattgcttttgattttatccaaaca 33899934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 230
Target Start/End: Original strand, 1313052 - 1313097
Alignment:
Q  185 aattccagaattgcttttgagttgccgcagaagctacaatttgtgg 230  Q
    ||||||| ||||||||||||||||| ||| ||||| ||||||||||    
T  1313052 aattccaaaattgcttttgagttgctgcaaaagctccaatttgtgg 1313097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 145 - 298
Target Start/End: Complemental strand, 35930102 - 35929950
Alignment:
Q  145 catgggtaattatgaaaaatatatcttttaacaaaaagcaaattccagaattgcttttgagttgccgcagaagctacaatttgtggcttcctgttaactc 244  Q
    |||||||| ||||| ||||||||| | ||||||||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||| |||||| |    
T  35930102 catgggtatttatggaaaatatatttcttaacaaaaagcaaactccagaattgctttt-agttgccgcagaagctaaaatttgtggcttccagttaaccc 35930004  T
Q  245 acgttttggatgcaaacttgcttttttaaaattgcttttgactgtgtccaaaca 298  Q
    |  |||||||||  || ||||||||| | ||| |||||||| | | ||||||||    
T  35930003 atattttggatgtgaaattgctttttcacaatcgcttttgattttatccaaaca 35929950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 160 - 320
Target Start/End: Complemental strand, 14958595 - 14958432
Alignment:
Q  160 aaaatatatcttttaacaaaaagcaaattccagaattgcttttgagttgccgcagaagctac----aatttgtggcttcctgttaactcacgttttggat 255  Q
    ||||||||| | |||||||||| |||| |||| ||||| ||| |||||| ||||||||| ||    ||||| ||||||| | ||||| ||  |||||| |    
T  14958595 aaaatatatttcttaacaaaaatcaaactccaaaattgattt-gagttgtcgcagaagccacccacaatttatggcttcttattaacccatattttggtt 14958497  T
Q  256 gcaaacttgcttttttaaaattgcttttgactgtgtccaaacatcatagaaaacggcaaactcac 320  Q
    | |||||||||||| || || ||||||| | |||||||||||||||| ||||| | |||||||||    
T  14958496 gtaaacttgcttttctagaactgcttttcattgtgtccaaacatcatggaaaatgacaaactcac 14958432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 200 - 324
Target Start/End: Original strand, 9276332 - 9276456
Alignment:
Q  200 tttgagttgccgcagaagctacaatttgtggcttcctgttaactcacgttttggatgcaaacttgcttttttaaaattgcttttgactgtgtccaaacat 299  Q
    ||||||||||||||||||||||||||| | ||||| ||||||  |||||||||| || ||||||||||||| | |||||||||||| ||||| |||||||    
T  9276332 tttgagttgccgcagaagctacaatttatagcttcttgttaaaccacgttttggctgtaaacttgctttttcagaattgcttttgagtgtgttcaaacat 9276431  T
Q  300 catagaaaacggcaaactcacgttt 324  Q
    |||  |||| |||||||||||||||    
T  9276432 catgaaaaatggcaaactcacgttt 9276456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 200 - 376
Target Start/End: Complemental strand, 49519055 - 49518879
Alignment:
Q  200 tttgagttgccgcagaagctacaatttgtggcttcctgttaactcacgttttggatgcaaacttgcttttttaaaattgcttttgactgtgtccaaacat 299  Q
    ||||||||||| |||||||||   ||| ||||||| | | ||| |||||||||| | ||||| ||| |||| | | |||||||| | ||| |||||||||    
T  49519055 tttgagttgccacagaagctatgttttctggcttcttctaaacccacgttttgggttcaaacctgcattttcagatttgcttttaattgtatccaaacat 49518956  T
Q  300 catagaaaacggcaaactcacgtttagaagtaaaaacgcaggtttggggagctcaaacgctcaaccaaacatacact 376  Q
    || | |||  |  ||| ||||||||  ||||| |||||  ||||||| ||||  ||||||||||||||||| |||||    
T  49518955 cacaaaaagtgataaagtcacgtttgaaagtagaaacgtgggtttggtgagcaaaaacgctcaaccaaacagacact 49518879  T

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