View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9845_low_9 (Length: 434)
Name: NF9845_low_9
Description: NF9845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9845_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 388; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 36 - 427
Target Start/End: Complemental strand, 41106827 - 41106436
Alignment:
| Q |
36 |
ttggatggtgcgaaaatatcatccgatgtattgtttcattgattcaatagtggaatttctgcattcgtattctaccattacttgttaatgattggcagaa |
135 |
Q |
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| T |
41106827 |
ttggatggtgcgaaaatatcatccgatgtattgtttcattgattcaatagtggaatttctgcattcgtattctaccattacttgttaatgattggcagaa |
41106728 |
T |
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| Q |
136 |
tccagatgagtttaccaaagatgttataaacaatgtattgcaaagaatcaaataaccaaaggaaaaattcatgctttaaaggtcgattctatttcttgtt |
235 |
Q |
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| T |
41106727 |
tccagatgagtttaccaaagatgttataaacaatgtattgcaaagaatcaaataaccaaaggaagaattcatgctttaaaggtcgattctatttcttgtt |
41106628 |
T |
|
| Q |
236 |
tcatattagtcattagataagtctgtaatttttattctcattatttggtcttcccatatatttaaggaactgctttagctcaacatagcgttatgtttgg |
335 |
Q |
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| T |
41106627 |
tcatattagtcattagataagtctgtaatttttattctcattatttggtcttcccatatatttaaggaactgctttagctcaacatagcgttatgtttgg |
41106528 |
T |
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| Q |
336 |
ggcagaatttgcacaagcatcttttggaagagctgtagcaaaatttccttgatgaggtccaaactttcattgttgttttacattaacacgaa |
427 |
Q |
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| T |
41106527 |
ggcagaatttgcacaagcatcttttggaagagctgtagcaaaatttccttgatgaggtccaaactttcattgttgttttacattaacacgaa |
41106436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 41106889 - 41106834
Alignment:
| Q |
1 |
gcaagagagaggagttctcaaatagaaagtatttcttggatggtgcgaaaatatca |
56 |
Q |
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| T |
41106889 |
gcaagagagaggagttctcaaatagaaagtatttcttggatggtgcgaaaatatca |
41106834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 171 - 404
Target Start/End: Original strand, 35704779 - 35705000
Alignment:
| Q |
171 |
tattgcaaagaatcaaataaccaaaggaaaaattcatgctttaaaggtcgattctatttcttgtttcatattagtcattagataagtctgtaatttttat |
270 |
Q |
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| T |
35704779 |
tattccaaagaatcaaatcaccaaatgaaaaactcatgctttaaaggttgattttatttcttgctttat-------attagataagtgtgtaatttttgt |
35704871 |
T |
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| Q |
271 |
t-ctcattatttggtcttcccatatatttaaggaactgctttagctcaacatagcgttatgtttggggcagaatttgcacaagcatcttttggaagagct |
369 |
Q |
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| T |
35704872 |
tccccattatgcggtctttctatatattcaaggaactgatttaactcaacttagccttatgtgtggggcagaatt------cgcatcttttggaagagcg |
35704965 |
T |
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| Q |
370 |
gtagcaaaatttccttgatgaggtccaaactttca |
404 |
Q |
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| T |
35704966 |
gtagcagaattaacttgatgaggtcaaaactttca |
35705000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 62 - 121
Target Start/End: Original strand, 35704473 - 35704532
Alignment:
| Q |
62 |
tgtattgtttcattgattcaatagtggaatttctgcattcgtattctaccattacttgtt |
121 |
Q |
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| T |
35704473 |
tgtactgtctcattgattcaatagtggaagttctgcttttgtattctacaactacttgtt |
35704532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 123 - 218
Target Start/End: Complemental strand, 35445283 - 35445187
Alignment:
| Q |
123 |
atgattggcagaatccagatgagtttaccaaagatgttataaacaa-tgtattgcaaagaatcaaataaccaaaggaaaaattcatgctttaaaggt |
218 |
Q |
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| T |
35445283 |
atgatgggaagaatccagatgaattcaccaaagatgttataaacaactgtattgcaaagaatcaaatcactaaaggaaaaactgatgctttgaaggt |
35445187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 402
Target Start/End: Complemental strand, 35445085 - 35445012
Alignment:
| Q |
329 |
tgtttggggcagaatttgcacaagcatcttttggaagagctgtagcaaaatttccttgatgaggtccaaacttt |
402 |
Q |
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|||||||||||| |||||| ||||||||||||||| || || |||| || |||| ||||||||| ||||||| |
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| T |
35445085 |
tgtttggggcaggatttgcgcaagcatcttttggaggaattggagcagaacttccctgatgaggttgaaacttt |
35445012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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