View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9846_10 (Length: 429)

Name: NF9846_10
Description: NF9846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9846_10
NF9846_10
[»] chr8 (18 HSPs)
chr8 (1-323)||(25489225-25489547)
chr8 (161-323)||(25646202-25646369)
chr8 (161-288)||(24913783-24913915)
chr8 (196-323)||(25603826-25603951)
chr8 (224-323)||(25799544-25799640)
chr8 (261-323)||(25694637-25694699)
chr8 (366-419)||(25489590-25489643)
chr8 (250-323)||(25321934-25322004)
chr8 (366-419)||(25694742-25694795)
chr8 (174-263)||(25569119-25569208)
chr8 (366-419)||(25646412-25646465)
chr8 (366-414)||(24913658-24913706)
chr8 (366-419)||(25322047-25322098)
chr8 (4-90)||(25603312-25603397)
chr8 (366-419)||(25604000-25604053)
chr8 (190-238)||(25321889-25321937)
chr8 (382-419)||(25799658-25799695)
chr8 (134-162)||(25385414-25385442)
[»] scaffold0070 (3 HSPs)
scaffold0070 (161-288)||(17826-17951)
scaffold0070 (366-411)||(17704-17749)
scaffold0070 (134-162)||(18361-18389)
[»] scaffold0526 (1 HSPs)
scaffold0526 (164-209)||(11146-11191)
[»] chr3 (1 HSPs)
chr3 (164-209)||(11971234-11971279)


Alignment Details
Target: chr8 (Bit Score: 284; Significance: 1e-159; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 25489225 - 25489547
Alignment:
Q  1 tgtgaatttttgtaaaagatgtcaagagacaaaagcagcaacaactattcatgatatatcatcaaagagtttaattactggaagcaattgnnnnnnnnna 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||         |    
T  25489225 tgtgaatttttgtaaaagatgtcaagagacaaaagcagcaacaactattcatgatatatcatcaaatagtttaattactggaagcaattgttttttttta 25489324  T
Q  101 aacatcttttttgcttgttgatttcgggcaaacaatatatttttgtacttttgacacaagattatgtagcaacctagtaagtagacaccacctgatatga 200  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25489325 aacatcttttttgcttgttgatttcgtgcaaacaatatatttttgtacttttgacacaagattatgtagcaacctagtaagtagacaccacctgatatga 25489424  T
Q  201 cataaaagacagaaatattcaatcaaaaactgattagacagttcagtaatagaagatcttttcttcctattcttacacaatgagtcaagacccttactac 300  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25489425 cataaaagacagaaatattcaatcaaaaactgattagaaagttcagtaatagaagatcttttcttcctattcttacacaatgagtcaagacccttactac 25489524  T
Q  301 tattctcctccaaagactgcacc 323  Q
    |||||||||||||||||||||||    
T  25489525 tattctcctccaaagactgcacc 25489547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 161 - 323
Target Start/End: Original strand, 25646202 - 25646369
Alignment:
Q  161 attatgtagcaacctagtaagtaga-----caccacctgatatgacataaaagacagaaatattcaatcaaaaactgattagacagttcagtaatagaag 255  Q
    |||||||||||||||||||||||||     ||||||||| ||| |||||||||||||||||||||||  ||||||||||||||  |||||||||||||||    
T  25646202 attatgtagcaacctagtaagtagactagacaccacctgctataacataaaagacagaaatattcaactaaaaactgattagaaggttcagtaatagaag 25646301  T
Q  256 atcttttcttcctattcttacacaatgagtcaagacccttactactattctcctccaaagactgcacc 323  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25646302 atcttttcttcccattcttacacaatgagtcaagacccttactactattctcctccaaagactgcacc 25646369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 161 - 288
Target Start/End: Complemental strand, 24913915 - 24913783
Alignment:
Q  161 attatgtagcaacctagtaagtagac-----accacctgatatgacataaaagacagaaatattcaatcaaaaactgattagacagttcagtaatagaag 255  Q
    ||||||||||||||||||||||||||     |||||||| ||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  24913915 attatgtagcaacctagtaagtagactagacaccacctgctataacataaaagacagaaatattcaaccaaaaactgattagaaagttcagtaatagaag 24913816  T
Q  256 atcttttcttcctattcttacacaatgagtcaa 288  Q
    |||||||||||| ||||||||||||||||||||    
T  24913815 atcttttcttcccattcttacacaatgagtcaa 24913783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 196 - 323
Target Start/End: Original strand, 25603826 - 25603951
Alignment:
Q  196 tatgacataaaagacagaaatattcaatcaaaa-actgattagacagttcagtaatagaagatcttttcttcctattcttacacaatgagtcaagaccct 294  Q
    ||||||| ||||| ||||||||||||| ||||| |||||||||| |||||||||||| ||||||||||||||| |||| |||||||||||||||||||||    
T  25603826 tatgacaaaaaaggcagaaatattcaaccaaaaaactgattagaaagttcagtaatataagatcttttcttcccattcgtacacaatgagtcaagaccct 25603925  T
Q  295 tactactattctcctccaaagactgcacc 323  Q
     |||||   ||||||||||||||||||||    
T  25603926 cactac---tctcctccaaagactgcacc 25603951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 224 - 323
Target Start/End: Original strand, 25799544 - 25799640
Alignment:
Q  224 caaaaactgattagacagttcagtaatagaagatcttttcttcctattcttacacaatgagtcaagacccttactactattctcctccaaagactgcacc 323  Q
    ||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||   ||||||||||||||||||||    
T  25799544 caaaaactgattacaaagttcagtaatagaagatcttttcttcccattcttacacaatgattcaagaccctcactac---tctcctccaaagactgcacc 25799640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 261 - 323
Target Start/End: Original strand, 25694637 - 25694699
Alignment:
Q  261 ttcttcctattcttacacaatgagtcaagacccttactactattctcctccaaagactgcacc 323  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25694637 ttcttcccattcttacacaatgagtcaagacccttactactattctcctccaaagactgcacc 25694699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 366 - 419
Target Start/End: Original strand, 25489590 - 25489643
Alignment:
Q  366 gagaggggatacaacataaatggatacaatacacacgatttacatgcttctgtg 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25489590 gagaggggatacaacataaatggatacaatacacacgatttacatgcttctgtg 25489643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 250 - 323
Target Start/End: Original strand, 25321934 - 25322004
Alignment:
Q  250 tagaagatcttttcttcctattcttacacaatgagtcaagacccttactactattctcctccaaagactgcacc 323  Q
    |||||||||||||||||| |||||||||||||||||||||||||| |||||   ||||||||||||||||||||    
T  25321934 tagaagatcttttcttcccattcttacacaatgagtcaagaccctcactac---tctcctccaaagactgcacc 25322004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 366 - 419
Target Start/End: Original strand, 25694742 - 25694795
Alignment:
Q  366 gagaggggatacaacataaatggatacaatacacacgatttacatgcttctgtg 419  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  25694742 gagaggggatacaacataaatggatacagtacacacgatttacatgcttctgtg 25694795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 174 - 263
Target Start/End: Original strand, 25569119 - 25569208
Alignment:
Q  174 ctagtaagtagacaccacctgatatgacataaaagacagaaatattcaatcaaaaactgattagacagttcagtaatagaagatcttttc 263  Q
    ||||||| ||||||||||||| ||||||| | |||| | |||||| |||  ||||| |||||||  ||||||||||||||||||||||||    
T  25569119 ctagtaactagacaccacctggtatgacagagaagaaataaatatgcaacaaaaaaatgattagcaagttcagtaatagaagatcttttc 25569208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 366 - 419
Target Start/End: Original strand, 25646412 - 25646465
Alignment:
Q  366 gagaggggatacaacataaatggatacaatacacacgatttacatgcttctgtg 419  Q
    |||||||||||||||||||||||||| | |||||||||||||||||||| ||||    
T  25646412 gagaggggatacaacataaatggatatagtacacacgatttacatgcttttgtg 25646465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 366 - 414
Target Start/End: Complemental strand, 24913706 - 24913658
Alignment:
Q  366 gagaggggatacaacataaatggatacaatacacacgatttacatgctt 414  Q
    |||||||||||||||||||||||||| | ||||||||||||||||||||    
T  24913706 gagaggggatacaacataaatggatagagtacacacgatttacatgctt 24913658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 366 - 419
Target Start/End: Original strand, 25322047 - 25322098
Alignment:
Q  366 gagaggggatacaacataaatggatacaatacacacgatttacatgcttctgtg 419  Q
    ||||||||||||||  |||||||||||| ||||||| |||||||||||||||||    
T  25322047 gagaggggatacaa--taaatggatacagtacacacaatttacatgcttctgtg 25322098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 25603312 - 25603397
Alignment:
Q  4 gaatttttgtaaaagatgtcaagagacaaaagcagcaacaactattcatgatatatcatcaaagagtttaattactggaagcaattg 90  Q
    ||||||||||||| ||||||  |||||||| || | |||||| || ||||||||||||||  |||||||||||||| |||| |||||    
T  25603312 gaatttttgtaaacgatgtcg-gagacaaaggccggaacaacaatgcatgatatatcatcttagagtttaattactagaagaaattg 25603397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 366 - 419
Target Start/End: Original strand, 25604000 - 25604053
Alignment:
Q  366 gagaggggatacaacataaatggatacaatacacacgatttacatgcttctgtg 419  Q
    ||||||| |||||| ||| ||||||| | |||||||||||||||||||||||||    
T  25604000 gagagggtatacaatatatatggatatagtacacacgatttacatgcttctgtg 25604053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 238
Target Start/End: Original strand, 25321889 - 25321937
Alignment:
Q  190 acctgatatgacataaaagacagaaatattcaatcaaaaactgattaga 238  Q
    ||||| ||||||||||||| |||| |||||||| |||||||||||||||    
T  25321889 acctgctatgacataaaaggcagatatattcaaccaaaaactgattaga 25321937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 419
Target Start/End: Original strand, 25799658 - 25799695
Alignment:
Q  382 taaatggatacaatacacacgatttacatgcttctgtg 419  Q
    |||||||||||| ||||||| |||||||||||||||||    
T  25799658 taaatggatacagtacacaccatttacatgcttctgtg 25799695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 134 - 162
Target Start/End: Original strand, 25385414 - 25385442
Alignment:
Q  134 aatatatttttgtacttttgacacaagat 162  Q
    |||||||||||||||||||||||||||||    
T  25385414 aatatatttttgtacttttgacacaagat 25385442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 85; Significance: 2e-40; HSPs: 3)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 161 - 288
Target Start/End: Complemental strand, 17951 - 17826
Alignment:
Q  161 attatgtagcaacctagtaagtagacaccacctgatatgacataaaagacagaaatattcaatcaaaaactgattagacagttcagtaatagaagatctt 260  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||| | || ||||||||||||||| ||||||||||||||  |||||    
T  17951 attatgtagcaacctagtaagtagacaccacctgctataacataaaagacaaaaataattaaccaaaaactgattagaaagttcagtaataga--atctt 17854  T
Q  261 ttcttcctattcttacacaatgagtcaa 288  Q
    ||||||| ||||||||||||||||||||    
T  17853 ttcttcccattcttacacaatgagtcaa 17826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 366 - 411
Target Start/End: Complemental strand, 17749 - 17704
Alignment:
Q  366 gagaggggatacaacataaatggatacaatacacacgatttacatg 411  Q
    |||||||||||||||||||||||||||| |||||||||||||||||    
T  17749 gagaggggatacaacataaatggatacagtacacacgatttacatg 17704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 134 - 162
Target Start/End: Complemental strand, 18389 - 18361
Alignment:
Q  134 aatatatttttgtacttttgacacaagat 162  Q
    |||||||||||||||||||||||||||||    
T  18389 aatatatttttgtacttttgacacaagat 18361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0526 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0526
Description:

Target: scaffold0526; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 209
Target Start/End: Complemental strand, 11191 - 11146
Alignment:
Q  164 atgtagcaacctagtaagtagacaccacctgatatgacataaaaga 209  Q
    ||||||||| |||||||||||||||||| || ||||||| ||||||    
T  11191 atgtagcaaactagtaagtagacaccacatggtatgacacaaaaga 11146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 209
Target Start/End: Complemental strand, 11971279 - 11971234
Alignment:
Q  164 atgtagcaacctagtaagtagacaccacctgatatgacataaaaga 209  Q
    ||||||||| |||||||||||||||||| || ||||||| ||||||    
T  11971279 atgtagcaaactagtaagtagacaccacatggtatgacacaaaaga 11971234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University