View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9846_11 (Length: 382)
Name: NF9846_11
Description: NF9846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9846_11 |
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Alignment Details
Target: chr8 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 142 - 289
Target Start/End: Original strand, 18416975 - 18417122
Alignment:
| Q |
142 |
gtgtgatgagaaagagaagtgggtacttacttgtcaccatgaactggaactccccattcctcatcatgataagcaatatagatgggatctatttaataaa |
241 |
Q |
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| T |
18416975 |
gtgtgatgagaaagagaagtgggtacttacttgtcatcatgaactggaactccccattcctcatcatgataagcaatatagatgggatctatttaataaa |
18417074 |
T |
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| Q |
242 |
aagagacacattggtattagtacattctgattttcaaataaaacacac |
289 |
Q |
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| T |
18417075 |
aagagacacattggtattagtacattctgattttcaaataaaacacac |
18417122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 18416847 - 18416901
Alignment:
| Q |
16 |
atccaacttgagcaccacttaaaactagaagttcaaacaacatcctgcatgtgca |
70 |
Q |
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| T |
18416847 |
atccaacttgagcaccacttaaaactagaagttcaaacaacatcctgcatgtgca |
18416901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 166 - 249
Target Start/End: Original strand, 26803842 - 26803924
Alignment:
| Q |
166 |
acttacttgtcaccatgaactggaactccccattcctcatcatgataagcaatatagatgggatctatttaataaaaagagaca |
249 |
Q |
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| T |
26803842 |
acttacttgtcatcatgaactggaactccccattcttcatcatgataagcaatatagataggatctgttt-atcaaaagagaca |
26803924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 62
Target Start/End: Original strand, 26803372 - 26803418
Alignment:
| Q |
16 |
atccaacttgagcaccacttaaaactagaagttcaaacaacatcctg |
62 |
Q |
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| T |
26803372 |
atccaacttgagctccacttaaaattagaagttcaaacaacatcctg |
26803418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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