View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9846_12 (Length: 357)
Name: NF9846_12
Description: NF9846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9846_12 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 12 - 357
Target Start/End: Complemental strand, 34577916 - 34577572
Alignment:
| Q |
12 |
atgaatctgcgctgttatttgagagcagtgtgattttggattgttgtgggaataatatttatgtaaaatgcttagatttgaaggccaaaatcactccaat |
111 |
Q |
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| T |
34577916 |
atgaatctgcgctgttatttgagagcagtgtgattttggattgttgtgggaataatatttatgtaaaatgcttagatttgaaggccaaaatcactccaat |
34577817 |
T |
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| Q |
112 |
aatcatgtgctgatgaccnnnnnnnattccaattaattaatttattatactttgagtaacttgacacatatttgccagcaacgaactgcataccctccaa |
211 |
Q |
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| T |
34577816 |
aatcatgtgctgatgacctttttttattccaattaattaatttattatactttgagtaacttgacacatatttgccagcaacgaactgcataccctccaa |
34577717 |
T |
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| Q |
212 |
tttcttaatgttatgtacctcctataaattaatcaatgttacttctacaaatctctataatctaaaatacgtaaactttttgtaaccnnnnnnngaaata |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
34577716 |
tttcttaatgttatgtacctcctataaattaatcaatgttacttctacaaatctctataatctaaaatacgtaaactttttgtaaccaaaaaaagaaata |
34577617 |
T |
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| Q |
312 |
cgtaaagtttttgctaagaagtacactaacggtatttgcttctttt |
357 |
Q |
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| T |
34577616 |
cgtaaag-ttttgctaagaagtacactaacggtatttgcttctttt |
34577572 |
T |
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