View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9846_13 (Length: 347)
Name: NF9846_13
Description: NF9846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9846_13 |
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Alignment Details
Target: chr8 (Bit Score: 148; Significance: 5e-78; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 102 - 320
Target Start/End: Complemental strand, 21597532 - 21597313
Alignment:
| Q |
102 |
attgttacaacttttgttatttgttttattattgtaatcg-ttttatttacggaaaatcgtcaaatttaacaccgttttttccttacggtgttaaaggtg |
200 |
Q |
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|||||||||| |||| | || ||||||||||||| |||| |||||| |||| || || |||||||||||||||||||||||||||||||||||||||| |
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| T |
21597532 |
attgttacaatttttatcatcggttttattattgtgatcggttttatacacgggaagtcttcaaatttaacaccgttttttccttacggtgttaaaggtg |
21597433 |
T |
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| Q |
201 |
tttttaatgctgctgctgttgtgtattggtcttataccggttttgatatggttgcaactgtggctgaagaaactaaaaacccttctagagatatacctat |
300 |
Q |
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| T |
21597432 |
tttttaacgccgcagctgttgtgtattggtcttataccggtttcgatatggttgcaactatggctgaagaaactaaaaacccttctagagatatacctat |
21597333 |
T |
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| Q |
301 |
tggtttaattggttcaatgt |
320 |
Q |
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|||||||||||||||||||| |
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| T |
21597332 |
tggtttaattggttcaatgt |
21597313 |
T |
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Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 11 - 104
Target Start/End: Original strand, 1196179 - 1196272
Alignment:
| Q |
11 |
cagagatgcaggagttgttccaaaaatttgaagaaaacaactatgttttcaattaccaaacagttagtgggtcaagaactgtacaagatctatt |
104 |
Q |
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| T |
1196179 |
cagagatgcaggagttgttccaaaaatttgaagaaaacaactatgttttcaattaccgaacagttagtgggtcaagaactgtacaagatctatt |
1196272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 89; Significance: 7e-43; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 12 - 104
Target Start/End: Original strand, 19805663 - 19805755
Alignment:
| Q |
12 |
agagatgcaggagttgttccaaaaatttgaagaaaacaactatgttttcaattaccaaacagttagtgggtcaagaactgtacaagatctatt |
104 |
Q |
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| T |
19805663 |
agagatgcaggagttgttccaaaaatttgaagaaaacaactatgttttcaattaccgaacagttagtgggtcaagaactgtacaagatctatt |
19805755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 12 - 102
Target Start/End: Original strand, 22518776 - 22518865
Alignment:
| Q |
12 |
agagatgcaggagttgttccaaaaatttgaagaaaacaactatgttttcaattaccaaacagttagtgggtcaagaactgtacaagatcta |
102 |
Q |
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| T |
22518776 |
agagatgcaggagttgttccaaaaatttga-gaaaacaactatgttttcaattacagaatagttagtgggtcaagaactgtacaagatcta |
22518865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 11 - 84
Target Start/End: Complemental strand, 25215024 - 25214951
Alignment:
| Q |
11 |
cagagatgcaggagttgttccaaaaatttgaagaaaacaactatgttttcaattaccaaacagttagtgggtca |
84 |
Q |
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| T |
25215024 |
cagagatgtaggggttgttccaaaaatttgaagaaaacaattatgttttcaattacagaacggttaatgggtca |
25214951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 104
Target Start/End: Original strand, 8492909 - 8492998
Alignment:
| Q |
11 |
cagagatgcaggagttgttccaaaaatttgaagaaaacaactatgttttcaattaccaaacagttagtgggtcaagaactgtacaagatctatt |
104 |
Q |
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|||||||||| |||||| |||||||| |||||||||||| ||||||||| ||||| ||| |||||| |||||| ||||||||||||| |||| |
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| T |
8492909 |
cagagatgcatgagttgatccaaaaaattgaagaaaaca--tatgttttctattacagaacggttagt-ggtcaa-aactgtacaagatatatt |
8492998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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