View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9846_14 (Length: 336)
Name: NF9846_14
Description: NF9846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9846_14 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 9 - 336
Target Start/End: Complemental strand, 2747696 - 2747363
Alignment:
| Q |
9 |
gattatacttttctggttttaccatattgtctttgactatt------gtagttgattatgccttgtaatttttcatatatatttcagaaatcatttttca |
102 |
Q |
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| T |
2747696 |
gattatacttttctggttttaccatattgtctttgactattaatattgtagttgattatgccttgtaatttttcatttatatttcagaaatcatttttca |
2747597 |
T |
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| Q |
103 |
agcaattttatggatcagtgacaaagttggattatgtgacattaaggcgtggtttcattatggtaagatttgcatgttatgtatttgcaattatatatat |
202 |
Q |
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| T |
2747596 |
agcaattttatggatcagtgacaaagttggattatgtgacattaaggcgtggtttcattatggtaagatatgtatgttatgtatttgcaattatatatat |
2747497 |
T |
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| Q |
203 |
gattgaaccatattattaattttgtttttctattttagactcattgtaggggaaatccaaagtttaattttcacaagtacatgatccgtgcacttgaaga |
302 |
Q |
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| T |
2747496 |
gattgaaccatattattaattttgtttttctattttagactcattgtaggggaaatccaaagtttaattttcacaagtacatgatccgtgcacttgaaga |
2747397 |
T |
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| Q |
303 |
tgacttccaaaacgttgttggtattaggtatgtg |
336 |
Q |
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| T |
2747396 |
tgacttccaaaacgttgttggtattaggtatgtg |
2747363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 86 - 334
Target Start/End: Complemental strand, 2755662 - 2755414
Alignment:
| Q |
86 |
tcagaaatcatttttcaagcaattttatggatcagtgacaaagttggattatgtgacattaaggcgtggtttcattatggtaagatttgcatgttatgta |
185 |
Q |
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| T |
2755662 |
tcagaaatcatttttcaagcaattttatggatctgtgacaaagttggactatgtgacattaaggcttggtttcattaaggtaagattttagtgtgca-ta |
2755564 |
T |
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| Q |
186 |
t-ttgcaattat-atatatgattgaaccatattattaattttgtttttctattttagactcattgtaggggaaatccaaagtttaattttcacaagtaca |
283 |
Q |
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| T |
2755563 |
tcttgccattattatatatgattgaatcatattattaattctgtttat-tgttttagactcattgtaggggaaatccgaagtttaattttcacaagtaca |
2755465 |
T |
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| Q |
284 |
tgatccgtgcacttgaagatgacttccaaaacgttgttggtattaggtatg |
334 |
Q |
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| T |
2755464 |
tgaaccgtgcgcttgaagatgatttcaagaaagttgtcggtattaggtatg |
2755414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 68 - 275
Target Start/End: Complemental strand, 2372946 - 2372741
Alignment:
| Q |
68 |
taatttttcatatatatttcagaaatcatttttcaagcaattttatggatcagtgacaaagttggattatgtgacattaaggcgtggtttcattatggta |
167 |
Q |
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| T |
2372946 |
taattttgcatttttatttcagaaataaattttcaagcaattttatggatctatgacaaagttggactatatggcattaaggcttggtttcattaaggta |
2372847 |
T |
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| Q |
168 |
agatttgcatgt-tatgtatttgcaattatatatatgattgaaccatattattaattttgtttttctattttagactcattgtaggggaaatccaaagtt |
266 |
Q |
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| T |
2372846 |
agattttagtgtgcatatcttgccaatattatctattattgaatcatattattaatgatgattctctatattagactcattgtaggg---attcaaagtt |
2372750 |
T |
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| Q |
267 |
taattttca |
275 |
Q |
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| T |
2372749 |
taattttca |
2372741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 84 - 169
Target Start/End: Original strand, 55322043 - 55322128
Alignment:
| Q |
84 |
tttcagaaatcatttttcaagcaattttatggatcagtgacaaagttggattatgtgacattaaggcgtggtttcattatggtaag |
169 |
Q |
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| T |
55322043 |
tttcagcaatcctttttcaagcaattttatggctctgtgacaaaatcagattatgtcacattaagacttggtttcattacggtaag |
55322128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 259 - 305
Target Start/End: Original strand, 55322259 - 55322305
Alignment:
| Q |
259 |
ccaaagtttaattttcacaagtacatgatccgtgcacttgaagatga |
305 |
Q |
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| T |
55322259 |
ccaaagtttaattttcacaagtacatgattcgtgcccttgaagatga |
55322305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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