View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9846_15 (Length: 330)

Name: NF9846_15
Description: NF9846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9846_15
NF9846_15
[»] chr5 (3 HSPs)
chr5 (16-330)||(31474165-31474479)
chr5 (16-329)||(40841735-40842038)
chr5 (267-327)||(31405553-31405613)


Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 16 - 330
Target Start/End: Original strand, 31474165 - 31474479
Alignment:
Q  16 atcacagaacctcccaataaagattccatatactggcagcaaggtatttcccactgatattattatttcttccttaagcttcttatcatatacaaaccaa 115  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31474165 atcacggaacctcccaataaagattccatatactggcagcaaggtatttcccactgatattattatttcttccttaagcttcttatcatatacaaaccaa 31474264  T
Q  116 ttggactgaactctacacatctcttcaaattgcttgttgaacaattttagcttttctttcaatagatcttctgcaacatcgtcattgagtgctgcatagt 215  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||    
T  31474265 ttggactgaactctgtacatctcttcaaattgcttgttgaacaattttagcttttctttcaatatatcttctgcaacatcgtcattgagtgccgcatagt 31474364  T
Q  216 cattgttgtccaacttcaaaaactcaaacaccatattccaggannnnnnnatataaagatcaaggtcttgttggaattttgcttgatttttctggaacca 315  Q
    |||||||||||||||||||||||||| |||||||  |||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31474365 cattgttgtccaacttcaaaaactcagacaccatgatccaggatttttttatataaagatcaaggtcttgttggaattttgcttgatttttctggaacca 31474464  T
Q  316 atcgttgccaaatac 330  Q
    |||||||||||||||    
T  31474465 atcgttgccaaatac 31474479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 16 - 329
Target Start/End: Original strand, 40841735 - 40842038
Alignment:
Q  16 atcacagaacctcccaataaagattccatatactggcagcaaggtatttcccactgatattattatttcttccttaagcttcttatcatatacaaaccaa 115  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  40841735 atcacggaacctcccaataaagattccatatactggcagcaaggtatttgccactgatattattatttcttctttaagcttcttatcatatacaaaccaa 40841834  T
Q  116 ttggactgaactctacacatctcttcaaattgcttgttgaacaattttagcttttctttcaatagatcttctgcaacatcgtcattgagtgctgcatagt 215  Q
    ||||||||||          |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||| ||||| ||| |||    
T  40841835 ttggactgaa----------ctcttcaaattgcttgttgaacaattttagcttttctttcaatatatcttctgcaacatcaccattcagtgccgcacagt 40841924  T
Q  216 cattgttgtccaacttcaaaaactcaaacaccatattccaggannnnnnnatataaagatcaaggtcttgttggaattttgcttgatttttctggaacca 315  Q
    |||||||||||||||||||||| || |||||  ||||||| ||         ||||||||||||||||||||||||||| ||||||||| | ||||||||    
T  40841925 cattgttgtccaacttcaaaaattccaacactttattccatgaatacctttgataaagatcaaggtcttgttggaatttcgcttgatttctttggaacca 40842024  T
Q  316 atcgttgccaaata 329  Q
    ||| || |||||||    
T  40842025 atcattaccaaata 40842038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 327
Target Start/End: Original strand, 31405553 - 31405613
Alignment:
Q  267 tataaagatcaaggtcttgttggaattttgcttgatttttctggaaccaatcgttgccaaa 327  Q
    ||||||||||||||| |||||||| ||||||||  || || ||||||||||| || |||||    
T  31405553 tataaagatcaaggttttgttggatttttgctttgttattttggaaccaatcattaccaaa 31405613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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