View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9846_17 (Length: 319)
Name: NF9846_17
Description: NF9846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9846_17 |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 2813464 - 2813746
Alignment:
| Q |
1 |
agtaattaattgtgggatattaattatctggacattcatcacgtgtggtgaaatgagtaggataaaagtagctctaaaacttcatatccaactccaagtg |
100 |
Q |
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| T |
2813464 |
agtaatttattgtgggatattaatcatctggacattcatcacgtgtggtgaaatgagtaggataaaagtagctctaaaacttcatatccaactccaagtg |
2813563 |
T |
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| Q |
101 |
ctatgagagtatctcctgaatggattgacattgagaaaatattgttttttcttatattcggatgaatggatccgaaaattttgatagctttttccatatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
2813564 |
ctatgagagtatctcctgaatggattgacattgagaaaatattgttttttcttatattcggatgaatggatccgaaaattttgataactttttccatatg |
2813663 |
T |
|
| Q |
201 |
gattggtgaatatatag-----agagtggtgcggtttttaataccattgagctaaagatgaagctcttcaaatctcaatatct |
278 |
Q |
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| T |
2813664 |
gattggtgaatatatagagagtagagtggtgtggtttttaataccattgagctaaagatgaagctcttcaaatctcaatatct |
2813746 |
T |
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