View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9846_18 (Length: 319)
Name: NF9846_18
Description: NF9846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9846_18 |
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Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 30 - 296
Target Start/End: Original strand, 34571401 - 34571673
Alignment:
| Q |
30 |
tagtttgcgaaaagaaaagtgtcttgttggtgttaggcaccggatacaccttca------atctgaaagtgtcggtgcaacatagatttacggtgataac |
123 |
Q |
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| T |
34571401 |
tagtttgcgaaaagaaaagtgtcttgttggtgttaggcaccggatacaccttcaatttcaatctgaaagtgtcggtgcaacatagatttacggtgataac |
34571500 |
T |
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| Q |
124 |
aagtacaataatagtaggttcaaataacatgcttacccatttgaaatccagcttgcacaaaatgagataccatatgataaacacgctccaactggataac |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34571501 |
aagtacaataatagtaggttcaaataacatgcttacccatttgaaatctagcttgcacaaaatgagataccatatgataaacacgctccaactggataac |
34571600 |
T |
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| Q |
224 |
taaaattccacttgttactagttctcctaagctatctggcagttcgatccctctaaattccaatccccgaggt |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34571601 |
taaaattccacttgttactagttctcctaagctatctggcagttcgatccctctaaattccaatccccgaggt |
34571673 |
T |
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