View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9846_19 (Length: 316)

Name: NF9846_19
Description: NF9846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9846_19
NF9846_19
[»] chr2 (17 HSPs)
chr2 (10-316)||(6915171-6915477)
chr2 (163-261)||(10543505-10543603)
chr2 (163-261)||(10471307-10471405)
chr2 (163-261)||(28106207-28106305)
chr2 (163-243)||(27966389-27966469)
chr2 (163-261)||(10859023-10859121)
chr2 (94-150)||(10492777-10492833)
chr2 (99-151)||(28105350-28105402)
chr2 (94-157)||(10463585-10463648)
chr2 (110-157)||(10507349-10507396)
chr2 (94-145)||(10860707-10860758)
chr2 (94-156)||(10474161-10474223)
chr2 (94-150)||(7476566-7476622)
chr2 (94-145)||(10848803-10848854)
chr2 (180-242)||(9081351-9081413)
chr2 (94-151)||(7478731-7478788)
chr2 (170-234)||(10505487-10505551)
[»] chr7 (4 HSPs)
chr7 (163-261)||(15044800-15044898)
chr7 (90-161)||(15045570-15045641)
chr7 (258-316)||(15044003-15044061)
chr7 (10-63)||(15047553-15047606)
[»] chr8 (1 HSPs)
chr8 (95-146)||(44307022-44307073)
[»] chr5 (1 HSPs)
chr5 (163-261)||(33601026-33601124)


Alignment Details
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 10 - 316
Target Start/End: Original strand, 6915171 - 6915477
Alignment:
Q  10 agaacctgtgtcagaggtagatgatgtacttgctgaagcgtttcttagcgatgatgagaacatttcagctgctgaccttgagggagcaattcgtagggct 109  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6915171 agaaactgtgtcagaggtagatgatgtacttgctgaagcgtttcttagtgatgatgagaacatttcagctgctgaccttgagggagcaattcgtagggct 6915270  T
Q  110 accatagcacggaaatttataccggtattcatgggtagtgctgtcaaaaacacgggggtacaaccacttctggatggtgtagttacttatttgccttgtc 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  6915271 accatagcacggaaatttataccggtattcatgggtagtgctgtcaaaaacacgggggtacaaccacttctggatggtgtagttagttatttgccttgtc 6915370  T
Q  210 cgattgaagttagtaattatgctcttgaccaatccaagaatgaggagaaggttcagctgactggaagtcccgatgggccccttgtagcattggctttcaa 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  6915371 cgattgaagttagtaattatgctcttgaccaatccaagaatgaggagaaggttcagctgactggaagtcccgatgggcctcttgtagcattggctttcaa 6915470  T
Q  310 gttggag 316  Q
    |||||||    
T  6915471 gttggag 6915477  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 163 - 261
Target Start/End: Complemental strand, 10543603 - 10543505
Alignment:
Q  163 gggggtacaaccacttctggatggtgtagttacttatttgccttgtccgattgaagttagtaattatgctcttgaccaatccaagaatgaggagaaggt 261  Q
    |||| |||||| |||| ||||||||||| ||| ||||||||| ||||| | ||||| ||||||||||||||| | |||||||||||||||||| |||||    
T  10543603 ggggttacaactacttttggatggtgtacttaattatttgccgtgtccaactgaagctagtaattatgctctcgtccaatccaagaatgaggaaaaggt 10543505  T

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Target: chr2; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 163 - 261
Target Start/End: Complemental strand, 10471405 - 10471307
Alignment:
Q  163 gggggtacaaccacttctggatggtgtagttacttatttgccttgtccgattgaagttagtaattatgctcttgaccaatccaagaatgaggagaaggt 261  Q
    |||| |||||| |||| ||||||||||| ||| ||||||||| ||||| | ||||| ||||||||||||||| | |||||| ||||||||||| |||||    
T  10471405 ggggctacaactacttttggatggtgtacttaattatttgccgtgtccaactgaagctagtaattatgctctcgtccaatctaagaatgaggaaaaggt 10471307  T

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Target: chr2; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 163 - 261
Target Start/End: Original strand, 28106207 - 28106305
Alignment:
Q  163 gggggtacaaccacttctggatggtgtagttacttatttgccttgtccgattgaagttagtaattatgctcttgaccaatccaagaatgaggagaaggt 261  Q
    |||| |||||| |||| ||||||||||| ||| ||||||||| ||||| ||||||| |||||||||| ||||||||||||| ||| ||| ||| |||||    
T  28106207 ggggctacaactacttttggatggtgtaattaattatttgccgtgtccaattgaagctagtaattatactcttgaccaatctaagcatggggaaaaggt 28106305  T

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Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 163 - 243
Target Start/End: Complemental strand, 27966469 - 27966389
Alignment:
Q  163 gggggtacaaccacttctggatggtgtagttacttatttgccttgtccgattgaagttagtaattatgctcttgaccaatc 243  Q
    |||| |||||| |||| ||||||||||| ||| ||||||||| ||||| ||||||| |||||||||| |||||||||||||    
T  27966469 ggggctacaactacttttggatggtgtaattaattatttgccgtgtccaattgaagctagtaattatactcttgaccaatc 27966389  T

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Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 163 - 261
Target Start/End: Complemental strand, 10859121 - 10859023
Alignment:
Q  163 gggggtacaaccacttctggatggtgtagttacttatttgccttgtccgattgaagttagtaattatgctcttgaccaatccaagaatgaggagaaggt 261  Q
    |||| |||||| |||| |||||||||||  || ||||||||| ||||| | |||||||||||||||| |||| ||| |||| ||||||| ||| |||||    
T  10859121 ggggctacaactacttttggatggtgtaactaattatttgccctgtccaactgaagttagtaattattctctcgacaaatctaagaatggggaaaaggt 10859023  T

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Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 94 - 150
Target Start/End: Complemental strand, 10492833 - 10492777
Alignment:
Q  94 agcaattcgtagggctaccatagcacggaaatttataccggtattcatgggtagtgc 150  Q
    ||||||||||||||| ||||||||||  |||||| ||||||| ||||||||||||||    
T  10492833 agcaattcgtagggcaaccatagcacataaatttgtaccggttttcatgggtagtgc 10492777  T

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Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 99 - 151
Target Start/End: Original strand, 28105350 - 28105402
Alignment:
Q  99 ttcgtagggctaccatagcacggaaatttataccggtattcatgggtagtgct 151  Q
    |||||||||| |||||||||||||| |||||||| ||||||||||||| ||||    
T  28105350 ttcgtagggccaccatagcacggaagtttataccagtattcatgggtaatgct 28105402  T

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Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 157
Target Start/End: Complemental strand, 10463648 - 10463585
Alignment:
Q  94 agcaattcgtagggctaccatagcacggaaatttataccggtattcatgggtagtgctgtcaaa 157  Q
    |||||||||||| || || ||||||||||||||||||||  | ||||||||||||||| |||||    
T  10463648 agcaattcgtagagccacgatagcacggaaatttataccatttttcatgggtagtgctttcaaa 10463585  T

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Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 110 - 157
Target Start/End: Complemental strand, 10507396 - 10507349
Alignment:
Q  110 accatagcacggaaatttataccggtattcatgggtagtgctgtcaaa 157  Q
    ||||||||||||||||||||||| ||||||||||| |||||| |||||    
T  10507396 accatagcacggaaatttatacccgtattcatgggcagtgctttcaaa 10507349  T

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Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 145
Target Start/End: Complemental strand, 10860758 - 10860707
Alignment:
Q  94 agcaattcgtagggctaccatagcacggaaatttataccggtattcatgggt 145  Q
    |||| |||||||||  ||||||||||||||||||||||| ||||||||||||    
T  10860758 agcagttcgtagggtcaccatagcacggaaatttataccagtattcatgggt 10860707  T

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Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 156
Target Start/End: Complemental strand, 10474223 - 10474161
Alignment:
Q  94 agcaattcgtagggctaccatagcacggaaatttataccggtattcatgggtagtgctgtcaa 156  Q
    |||| |||||||||| |||||||||||||| ||||||||  |||||||||| |||||| ||||    
T  10474223 agcagttcgtagggccaccatagcacggaagtttataccaatattcatgggcagtgctttcaa 10474161  T

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Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 150
Target Start/End: Original strand, 7476566 - 7476622
Alignment:
Q  94 agcaattcgtagggctaccatagcacggaaatttataccggtattcatgggtagtgc 150  Q
    |||||||| |||||| || ||||||| ||||||| ||||||| ||||||||||||||    
T  7476566 agcaattcatagggcaactatagcacagaaatttgtaccggttttcatgggtagtgc 7476622  T

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Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 94 - 145
Target Start/End: Complemental strand, 10848854 - 10848803
Alignment:
Q  94 agcaattcgtagggctaccatagcacggaaatttataccggtattcatgggt 145  Q
    |||| |||||||||| ||||||||||  ||||||||||| ||||||||||||    
T  10848854 agcagttcgtagggccaccatagcacacaaatttataccagtattcatgggt 10848803  T

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Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 242
Target Start/End: Original strand, 9081351 - 9081413
Alignment:
Q  180 tggatggtgtagttacttatttgccttgtccgattgaagttagtaattatgctcttgaccaat 242  Q
    ||||||||||| ||| ||||||||| ||||| |||||||  ||||||||||| || |||||||    
T  9081351 tggatggtgtacttaattatttgccgtgtccaattgaagcaagtaattatgcgctcgaccaat 9081413  T

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Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 151
Target Start/End: Original strand, 7478731 - 7478788
Alignment:
Q  94 agcaattcgtagggctaccatagcacggaaatttataccggtattcatgggtagtgct 151  Q
    |||| ||| |||||| |||| |||||| |||||||||||||| |||||||| ||||||    
T  7478731 agcagttcttagggcaaccagagcacgcaaatttataccggtcttcatgggcagtgct 7478788  T

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Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 234
Target Start/End: Complemental strand, 10505551 - 10505487
Alignment:
Q  170 caaccacttctggatggtgtagttacttatttgccttgtccgattgaagttagtaattatgctct 234  Q
    |||| |||| ||||||||||  ||| ||||||||| ||||| | ||||| |||||||||||||||    
T  10505551 caactacttttggatggtgtgcttaattatttgccgtgtccaactgaagctagtaattatgctct 10505487  T

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Target: chr7 (Bit Score: 59; Significance: 5e-25; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 163 - 261
Target Start/End: Complemental strand, 15044898 - 15044800
Alignment:
Q  163 gggggtacaaccacttctggatggtgtagttacttatttgccttgtccgattgaagttagtaattatgctcttgaccaatccaagaatgaggagaaggt 261  Q
    |||| ||||||||||||||||||||||| ||| ||||||||| ||||| |||||||||| ||||||||| ||||||||||| || || |||||||||||    
T  15044898 ggggatacaaccacttctggatggtgtacttagttatttgccatgtccaattgaagttaataattatgcccttgaccaatctaataaggaggagaaggt 15044800  T

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Target: chr7; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 90 - 161
Target Start/End: Complemental strand, 15045641 - 15045570
Alignment:
Q  90 agggagcaattcgtagggctaccatagcacggaaatttataccggtattcatgggtagtgctgtcaaaaaca 161  Q
    ||||||| ||||||||||||||| | || ||||||||||||||||||||||||||||||||| |||||||||    
T  15045641 agggagccattcgtagggctaccgtggcgcggaaatttataccggtattcatgggtagtgctttcaaaaaca 15045570  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 258 - 316
Target Start/End: Complemental strand, 15044061 - 15044003
Alignment:
Q  258 aggttcagctgactggaagtcccgatgggccccttgtagcattggctttcaagttggag 316  Q
    ||||| ||||| |||| | ||| ||||||||||||||||||||||||||||||||||||    
T  15044061 aggttgagctgcctggtaatcctgatgggccccttgtagcattggctttcaagttggag 15044003  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 63
Target Start/End: Complemental strand, 15047606 - 15047553
Alignment:
Q  10 agaacctgtgtcagaggtagatgatgtacttgctgaagcgtttcttagcgatga 63  Q
    |||| ||||||||||||| |||||| ||||||| |||||||||||||| |||||    
T  15047606 agaaactgtgtcagaggttgatgatatacttgcggaagcgtttcttagtgatga 15047553  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 95 - 146
Target Start/End: Complemental strand, 44307073 - 44307022
Alignment:
Q  95 gcaattcgtagggctaccatagcacggaaatttataccggtattcatgggta 146  Q
    |||||||||||||| |||||||||||||||||| ||||  | ||||||||||    
T  44307073 gcaattcgtagggcaaccatagcacggaaatttgtaccaattttcatgggta 44307022  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 261
Target Start/End: Complemental strand, 33601124 - 33601026
Alignment:
Q  163 gggggtacaaccacttctggatggtgtagttacttatttgccttgtccgattgaagttagtaattatgctcttgaccaatccaagaatgaggagaaggt 261  Q
    |||| ||||||||||| ||||||||||  ||| | ||||||| ||||| | |||||  | ||||||||||||   |||||| ||||||||||| |||||    
T  33601124 ggggctacaaccacttttggatggtgtgcttaataatttgccgtgtccaactgaagcaactaattatgctctcatccaatctaagaatgaggaaaaggt 33601026  T

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