View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9846_4 (Length: 645)
Name: NF9846_4
Description: NF9846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9846_4 |
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Alignment Details
Target: chr3 (Bit Score: 425; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 199 - 627
Target Start/End: Complemental strand, 35288712 - 35288284
Alignment:
| Q |
199 |
tcagcttcgaggccatagagaagggactaacagtttgatagtcgaggccctgattctcgtcgggagagtaatcatctgagcctatatcaacaaacttgat |
298 |
Q |
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| T |
35288712 |
tcagcttcgaggccatagagaagggactaacagtttgatagtcgaggccctgattctcgtcgggagagtaatcatctgagcctatatcaacaaacttgat |
35288613 |
T |
|
| Q |
299 |
ggtgccataactcgtgttcctctctcgtagcatattcacctaaaatgacaaataacaacaaagagcaaaaaactctatcaatgaatgagatgaaacaagg |
398 |
Q |
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| T |
35288612 |
ggtgccataactcgtgttcctctctcgtagcatattcacctaaaatgacaaataacaacaaagagcaaaagactctatcaatgaatgagatgaaacaagg |
35288513 |
T |
|
| Q |
399 |
ttcactaactaactatataacatgagaattatgtggttatgaacaaaacaaccacacttgttaattgttattgaaacaaagattaacctctcgcatgcat |
498 |
Q |
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| T |
35288512 |
ttcactaactaactatataacatgagaattatgtggttatgaacaaaacaaccacacttgttaattgttattgaaacaaagattaacctctcgcatgcat |
35288413 |
T |
|
| Q |
499 |
aatggacaatctccatcatatagcattttaatcttccaatctttaggagactgttctccctcctcttctttcttagaaattgtagattctacagctctat |
598 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35288412 |
aatggacaatctccatcatatagcattttaatcttccaatctttaggagactgttctccctcctcttctttcttagaaattgtagattctacagctctat |
35288313 |
T |
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| Q |
599 |
cactaatagctcgaatgtaacattgagac |
627 |
Q |
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| T |
35288312 |
cactaatagctcgaatgtaacattgagac |
35288284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 16 - 134
Target Start/End: Complemental strand, 35288888 - 35288770
Alignment:
| Q |
16 |
atgcaaaagatgcttgaaaacctcacacatgcatgcaccaattagtccattacttgtaaaacaattcttcacataatcaaaatcttcaaatgaaattaac |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35288888 |
atgcaaaagatgcttgaaaacctcacacatgcatgcaccaattagtccattacttgtaaaacaattcttcacataatcaaaatcttcaaatgaaattaac |
35288789 |
T |
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| Q |
116 |
acatttgttgatgttcatg |
134 |
Q |
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| T |
35288788 |
acatttgttgatgttcatg |
35288770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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